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AT1G73030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SNF7 family protein
Curator
Summary (TAIR10)
Encodes an ESCRT-related protein: CHMP1A/AT1G73030; CHMP1B/AT1G17730. CHMP1A and B mediate multivesicular body sorting of auxin carriers and are required for plant development. ESCRT: Endosomal Sorting Complexes Required For Transport machinery; CHMP: Charged Multivesicular Body Protein/Chromatin Modifying Protein.
Computational
Description (TAIR10)
VPS46.2; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 46.1 (TAIR:AT1G17730.1); Has 1330 Blast hits to 1329 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 507; Fungi - 292; Plants - 340; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5491eggNOG:KOG3232EMBL:AC008017EMBL:AY059851EMBL:AY081673EMBL:AY084868EMBL:CP002684
EnsemblPlants:AT1G73030EnsemblPlants:AT1G73030.1entrez:843634GeneID:843634Genevisible:Q9SSM4GO:GO:0000578GO:GO:0007034
GO:GO:0009793GO:GO:0010008GO:GO:0015031GO:GO:0032509GO:GO:0040007Gramene:AT1G73030.1hmmpanther:PTHR10476
hmmpanther:PTHR10476:SF11InParanoid:Q9SSM4IntAct:Q9SSM4InterPro:IPR005024KEGG:ath:AT1G73030KO:K12197ncoils:Coil
OMA:NNMEGARPaxDb:Q9SSM4Pfam:PF03357Pfam:Q9SSM4PhylomeDB:Q9SSM4PIR:G96755PRIDE:Q9SSM4
PRO:PR:Q9SSM4ProteinModelPortal:Q9SSM4Proteomes:UP000006548RefSeq:NP_565053.1STRING:3702.AT1G73030.1TAIR:AT1G73030tair10-symbols:CHMP1A
tair10-symbols:VPS46.2UniGene:At.22952UniGene:At.71264UniProt:Q9SSM4
Coordinates (TAIR10) chr1:+:27473938..27474848
Molecular Weight (calculated) 22692.20 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.65
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNTDKLMNQ IFDLKFTSKS LQRQSRKCEK EEKAEKLKVK KAIEKGNMDG ARIYAENAIR KRSEQMNYLR LASRLDAVVA RLDTQAKMTT ITKSMTNIVK
101: SLESSLATGN LQKMSETMDS FEKQFVNMEV QAEFMENAMA GSTSLSTPEG EVNSLMQQVA DDYGLEVSVG LPQPAGHAIP TKTEEKVDED DLSRRLAELK
201: ARG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)