AT1G72870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.978 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS class) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, sperm cell, root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS class) (TAIR:AT5G48780.2); Has 7950 Blast hits to 7386 proteins in 227 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 7937; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27421086..27422999 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58752.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||
| Length | 512 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSSSSEH KVFLSFRRED TGRTFVSHLY RSLDQKEIRT YKFENQQAGD GKRISSEVKQ AINESRIAVV VISENYVSSV LCLDVLAKII ERLPLIKIET 101: VFYEVDPGDL TRPTGKFADD FRRHEARENR RTVNRWRDAL DQLVSITNSN FCSRNWEDDS KMIDDLIIRL INIYFSKYYT PDVDIIAETT VGLDASVLGL 201: MTDIDMKYKL NSLSGSVESG FGLERYALEA TSVMDDMSNE SPSPTSDDSN GLVGMYRHKK AVYGLLDLES KNQVRTIGIW GFQGVGKTTL AECVFDDISS 301: HFQHYCFLTN ANKIYQNRIS PSLLKHLTRR RSSEDIFDAI KPSLVNRKVL FVVDGVDATY NEQFNDAMKV TRWLGPGSRI IMTSRFKSSL KFGGAKYEME 401: CLRYEEALQL FSLYAFKKTY PLIGFELFSI RAVHFAGRLP LSLKVLGSFL YDKDEESWKR TLHKLEASQD NDRRYVSNYI GAGEYLPRRQ IELEQYVSPD 501: EEEYSPSYIM SL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)