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AT1G72800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.719
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleolin like 2 (TAIR:AT3G18610.1); Has 429 Blast hits to 357 proteins in 85 species: Archae - 2; Bacteria - 90; Metazoa - 16; Fungi - 64; Plants - 227; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
DNASU:843611eggNOG:COG0724eggNOG:KOG4210EMBL:AC010926EMBL:BT000952EMBL:CP002684EnsemblPlants:AT1G72800
EnsemblPlants:AT1G72800.1entrez:843611Gene3D:3.30.70.330GeneID:843611GO:GO:0000166GO:GO:0003676Gramene:AT1G72800.1
HOGENOM:HOG000152241InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT1G72800ncoils:CoilOMA:EMIKEFAPfam:PF00076
PhylomeDB:Q9CAJ2PIR:H96752Proteomes:UP000006548RefSeq:NP_565046.1SMART:SM00360SMR:Q9CAJ2STRING:3702.AT1G72800.1
SUPFAM:SSF54928TAIR:AT1G72800UniGene:At.26565UniProt:Q9CAJ2
Coordinates (TAIR10) chr1:+:27397266..27398273
Molecular Weight (calculated) 35336.50 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.23
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MAESSKLSAT TVEAAPAMIK AKDVISPSEK EESDQTEITK VSVLKNLDEK EMIKEFADRL QRLEAKVDLL VTKADLLAIK ADIQELLISA KGEKVPAMKT
101: SAKASSESDD SYMDTSSEDE SSSAEEPVNK PAASAAKPAT KDSLFSAGFK PAAKDSLFSA GFKPDSLFSA GFEPAAKDSL FSAGFKPGSL FSAGFEPAAK
201: DSLFSAGFKP DSLFSVGVKP AAKDSLFSVG VNGRSFSVTG FDASLPVDDI KSALSKYFSS FGEITRVFVP PSHGTGGSLG YAYIDLKEGA EKALELGRHD
301: VGGWDLVVGK AEPIRSGSTW PFPGRCGNQG RCTFC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)