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AT1G72790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G57070.1); Has 16953 Blast hits to 10626 proteins in 654 species: Archae - 27; Bacteria - 1228; Metazoa - 7030; Fungi - 2381; Plants - 3856; Viruses - 536; Other Eukaryotes - 1895 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYIReggNOG:ENOG410ZEZ6EMBL:AC010926EMBL:BT000901
EMBL:CP002684EnsemblPlants:AT1G72790EnsemblPlants:AT1G72790.1entrez:843610
GeneID:843610GO:GO:0005634GO:GO:0005829GO:GO:0005886
GO:GO:0016021Gramene:AT1G72790.1InterPro:IPR008480KEGG:ath:AT1G72790
OMA:VRKSWDYPfam:PF05553PhylomeDB:Q9CAJ1PIR:G96752
Proteomes:UP000006548RefSeq:NP_177422.1TAIR:AT1G72790TMHMM:TMhelix
UniGene:At.27739UniProt:Q9CAJ1
Coordinates (TAIR10) chr1:+:27394848..27396533
Molecular Weight (calculated) 62618.30 Da
IEP (calculated) 9.77
GRAVY (calculated) -0.92
Length 561 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEDDGDAST PFWLQSRRNN TYFRRTASLG GRTTTIATQI FFAGTAAILI VVFIIPPFFS SVSQIFRPHL VRKSWDYLNF VLVLFAVLCG FLSRNTNNDE
101: SNHHKEEDIR NKFSTSPSII DRRSRVSNSG TTPRYWNDDR GGGGGDQTVY KRFSRLRSVS SYPDLRLREY EADERWRFYD DTRVSQCRYE DVDPIYPNQS
201: YRNWHEEGKP PPEDVDQTED GDNGEGSKVR NGGSETEKVE VVATAEAEVV EELKVPSAPP YIPSPPPSPP RPPPAKQAKR KTNRVYQDVS PQEEKKERDD
301: FVATTTPIPP PATVYQKSNK QEKKKGGATK DFLIALRRKK KKQRQQSIDG LDLLFGSDPP LVYSPPPPPP PPPPFFQGLF SSKKGKSKKN NSNPPPPPPP
401: PPPERRYESR ASTSKLRKAP VESRTSKPNP PAKVTQYVGT GSESPLMPIP PPPPPPPFKM PAWKFVKRGD YVRMASDISI SSDEPDDPDV AQSAGSKEAA
501: GSMFCPSPDV DTKADDFIAR FRAGLKLEKM NSVKRGRSNL GPEPGLHESG SSTGYRPSPS V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)