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AT1G72680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cinnamyl-alcohol dehydrogenase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cinnamyl-alcohol dehydrogenase (CAD1); FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, zinc ion binding, cofactor binding; INVOLVED IN: lignin biosynthetic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase homolog 3 (TAIR:AT2G21890.1); Has 36986 Blast hits to 36967 proteins in 3073 species: Archae - 711; Bacteria - 24167; Metazoa - 1364; Fungi - 2774; Plants - 3348; Viruses - 3; Other Eukaryotes - 4619 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G72680-MONOMERBioGrid:28819EC:1.1.1.195eggNOG:COG1064eggNOG:KOG0023EMBL:AC010926EMBL:AY288079
EMBL:BT002440EMBL:BT008840EMBL:CP002684EnsemblPlants:AT1G72680EnsemblPlants:AT1G72680.1entrez:843600Gene3D:3.40.50.720
Gene3D:3.90.180.10GeneID:843600Genevisible:Q9CAI3GO:GO:0005829GO:GO:0008270GO:GO:0009809GO:GO:0045551
GO:GO:0052747Gramene:AT1G72680.1hmmpanther:PTHR11695hmmpanther:PTHR11695:SF543HOGENOM:HOG000294667InterPro:IPR002085InterPro:IPR002328
InterPro:IPR011032InterPro:IPR013149InterPro:IPR013154InterPro:IPR016040InterPro:IPR020843InterPro:IPR029752KEGG:ath:AT1G72680
KO:K00083OMA:CNDREEVPANTHER:PTHR11695PaxDb:Q9CAI3Pfam:PF00107Pfam:PF08240Pfam:Q9CAI3
PhylomeDB:Q9CAI3PIR:E96751PRIDE:Q9CAI3PRO:PR:Q9CAI3PROSITE:PS00059ProteinModelPortal:Q9CAI3Proteomes:UP000006548
RefSeq:NP_177412.1scanprosite:PS00059scanprosite:PS00065SMART:SM00829SMR:Q9CAI3STRING:3702.AT1G72680.1SUPFAM:SSF50129
SUPFAM:SSF51735TAIR:AT1G72680tair10-symbols:ATCAD1tair10-symbols:CAD1UniGene:At.35070UniPathway:UPA00711UniProt:Q9CAI3
Coordinates (TAIR10) chr1:-:27359346..27360876
Molecular Weight (calculated) 38673.60 Da
IEP (calculated) 7.13
GRAVY (calculated) -0.04
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSESVENE CMCWAARDPS GLLSPHTITR RSVTTDDVSL TITHCGVCYA DVIWSRNQHG DSKYPLVPGH EIAGIVTKVG PNVQRFKVGD HVGVGTYVNS
101: CRECEYCNEG QEVNCAKGVF TFNGIDHDGS VTKGGYSSHI VVHERYCYKI PVDYPLESAA PLLCAGITVY APMMRHNMNQ PGKSLGVIGL GGLGHMAVKF
201: GKAFGLSVTV FSTSISKKEE ALNLLGAENF VISSDHDQMK ALEKSLDFLV DTASGDHAFD PYMSLLKIAG TYVLVGFPSE IKISPANLNL GMRMLAGSVT
301: GGTKITQQML DFCAAHKIYP NIEVIPIQKI NEALERVVKK DIKYRFVIDI KNSLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)