AT1G72650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRF-like 6 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Arabidopsis thaliana myb family transcription factor (At1g72650) | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRF-like 6 (TRFL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cadmium ion, response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 3 (TAIR:AT1G17460.1); Has 768 Blast hits to 751 proteins in 122 species: Archae - 0; Bacteria - 30; Metazoa - 117; Fungi - 31; Plants - 500; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27350253..27353483 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69546.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.22 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||||||||||
| Length | 624 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTVVGTVED RRDMFEGNAQ TRITPFSSTN QIGNPVAYKL VRVSGDGSLV PATDEEILEV NDTDMHIPSD TCQTIGYLAT DEENVEVDET DMHIASDACQ 101: TIGYLPAEGI PSRLSQIESS EAINSGLLHS DNVQPYTDQY NEEMLQKVEQ EERLENVHGS QMPSTPADAN IQCSNENNFF EEDQVHHEAL LQDECKMNES 201: DMMERCSNAV ASPKETALSA AAQKPDFSRV RGEICLDNLP IKALQETFRA TFGRDTTVKD KTWLKRRIAM GLINSCDVPT TNLRVKDNKL IGNQEKSNDV 301: TNAIRKEMGD DVRATKMKDA PSSTDHVNGH SNGGNHYYAS EDYSSEQRAA KRVRKPTRRY IEELSETDDK QQNDKSVIPS KDQRLSEKSE VRSISVSSGK 401: RVTVTRMVSL AGSEIEVPYV SHVRRSRPRE NIMALLGCHS SYLEDKASAA ESNLNLSPSQ LSSEVVNRDS VEKSASRPVQ NEFATSDENN VEHILSEVDQ 501: EMEPEHIDSS GNSSDENNIG VPIMQGGALR RKHHRAWTLS EIAKLVEGVS KYGAGKWSEI KKHLFSSHSY RTSVDLKDKW RNLLKTSFAQ SPSNSVGSLK 601: KHGSMHIPTQ ILLRVRELAE KQSQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)