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AT1G72650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRF-like 6
Curator
Summary (TAIR10)
Arabidopsis thaliana myb family transcription factor (At1g72650)
Computational
Description (TAIR10)
TRF-like 6 (TRFL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cadmium ion, response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 3 (TAIR:AT1G17460.1); Has 768 Blast hits to 751 proteins in 122 species: Archae - 0; Bacteria - 30; Metazoa - 117; Fungi - 31; Plants - 500; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJQKeggNOG:ENOG41127KIEMBL:AY045628EMBL:AY124868EMBL:AY519540EMBL:CP002684EnsemblPlants:AT1G72650
EnsemblPlants:AT1G72650.1entrez:843597ExpressionAtlas:Q94AX9Gene3D:1.10.10.60GeneID:843597GO:GO:0003677Gramene:AT1G72650.1
hmmpanther:PTHR21717hmmpanther:PTHR21717:SF25InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G72650Pfam:PF00249
Pfscan:PS51294PhylomeDB:Q94AX9PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_565045.1SMART:SM00717SMR:Q94AX9
SUPFAM:SSF46689TAIR:AT1G72650tair10-symbols:TRFL6UniGene:At.26165UniProt:Q94AX9
Coordinates (TAIR10) chr1:+:27350253..27353483
Molecular Weight (calculated) 69546.80 Da
IEP (calculated) 5.22
GRAVY (calculated) -0.76
Length 624 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTVVGTVED RRDMFEGNAQ TRITPFSSTN QIGNPVAYKL VRVSGDGSLV PATDEEILEV NDTDMHIPSD TCQTIGYLAT DEENVEVDET DMHIASDACQ
101: TIGYLPAEGI PSRLSQIESS EAINSGLLHS DNVQPYTDQY NEEMLQKVEQ EERLENVHGS QMPSTPADAN IQCSNENNFF EEDQVHHEAL LQDECKMNES
201: DMMERCSNAV ASPKETALSA AAQKPDFSRV RGEICLDNLP IKALQETFRA TFGRDTTVKD KTWLKRRIAM GLINSCDVPT TNLRVKDNKL IGNQEKSNDV
301: TNAIRKEMGD DVRATKMKDA PSSTDHVNGH SNGGNHYYAS EDYSSEQRAA KRVRKPTRRY IEELSETDDK QQNDKSVIPS KDQRLSEKSE VRSISVSSGK
401: RVTVTRMVSL AGSEIEVPYV SHVRRSRPRE NIMALLGCHS SYLEDKASAA ESNLNLSPSQ LSSEVVNRDS VEKSASRPVQ NEFATSDENN VEHILSEVDQ
501: EMEPEHIDSS GNSSDENNIG VPIMQGGALR RKHHRAWTLS EIAKLVEGVS KYGAGKWSEI KKHLFSSHSY RTSVDLKDKW RNLLKTSFAQ SPSNSVGSLK
601: KHGSMHIPTQ ILLRVRELAE KQSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)