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AT1G72610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24393051 (2015): extracellular region
  • PMID:23851315 (2013): plastid
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : germin-like protein 1
Curator
Summary (TAIR10)
germin-like protein (GLP1)
Computational
Description (TAIR10)
germin-like protein 1 (GER1); INVOLVED IN: biological_process unknown; LOCATED IN: extracellular matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin 3 (TAIR:AT5G20630.1); Has 1559 Blast hits to 1557 proteins in 130 species: Archae - 0; Bacteria - 82; Metazoa - 0; Fungi - 43; Plants - 1420; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II9ZeggNOG:ENOG410YB6MEMBL:AC010926EMBL:AF090733EMBL:AY085951EMBL:CP002684EMBL:D89055
EMBL:U75189EMBL:U75190EMBL:U75196EMBL:U75197EMBL:U75201EMBL:U75206EMBL:U95034
EMBL:U95035EMBL:X91921EnsemblPlants:AT1G72610EnsemblPlants:AT1G72610.1entrez:843593ExpressionAtlas:P94040Gene3D:2.60.120.10
GeneID:843593Genevisible:P94040GO:GO:0030145GO:GO:0031012GO:GO:0045735GO:GO:0048046Gramene:AT1G72610.1
hmmpanther:PTHR31238hmmpanther:PTHR31238:SF21HOGENOM:HOG000235000InterPro:IPR001929InterPro:IPR006045InterPro:IPR011051InterPro:IPR014710
InterPro:IPR019780KEGG:ath:AT1G72610OMA:TTFLDATPaxDb:P94040Pfam:P94040Pfam:PF00190PhylomeDB:P94040
PIR:F96750PRIDE:P94040PRINTS:PR00325PRO:PR:P94040PROSITE:PS00725ProteinModelPortal:P94040Proteomes:UP000006548
RefSeq:NP_177405.1scanprosite:PS00725SMART:SM00835SMR:P94040STRING:3702.AT1G72610.1SUPFAM:SSF51182TAIR:AT1G72610
tair10-symbols:ATGER1tair10-symbols:GER1tair10-symbols:GLP1UniGene:At.10971UniGene:At.23875UniGene:At.35746UniGene:At.43326
UniGene:At.71528UniGene:At.71882UniGene:At.75222UniProt:P94040UniProt:Q549N9
Coordinates (TAIR10) chr1:-:27339302..27339928
Molecular Weight (calculated) 21560.30 Da
IEP (calculated) 9.71
GRAVY (calculated) 0.51
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRTIFLLSL LFALSNASVQ DFCVANLKRA ETPAGYPCIR PIHVKATDFV FSGLGTPGNT TNIINAAVTP AFAAQFPGLN GLGLSTARLD LAPKGVIPMH
101: THPGASEVLF VLTGSITAGF VSSANAVYVQ TLKPGQVMVF PQGLLHFQIN AGKSSASAVV TFNSANPGLQ ILDFALFANS LPTELVVGTT FLDATTVKKL
201: KGVLGGTG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)