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AT1G72450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : jasmonate-zim-domain protein 6
Curator
Summary (TAIR10)
JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation.
Computational
Description (TAIR10)
jasmonate-zim-domain protein 6 (JAZ6); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 5 (TAIR:AT1G17380.1); Has 303 Blast hits to 298 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:28796DIP:DIP-53274NeggNOG:ENOG410JUQ8eggNOG:ENOG41106NM
EMBL:AC016529EMBL:AF370147EMBL:AY059089EMBL:AY088035
EMBL:CP002684EnsemblPlants:AT1G72450EnsemblPlants:AT1G72450.1entrez:843577
GeneID:843577Genevisible:Q9C9E3GO:GO:0003714GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0006952GO:GO:0009611
GO:GO:0009753GO:GO:0031347GO:GO:1903507GO:GO:2000022
Gramene:AT1G72450.1hmmpanther:PTHR33077hmmpanther:PTHR33077:SF13HOGENOM:HOG000239787
InParanoid:Q9C9E3IntAct:Q9C9E3InterPro:IPR010399InterPro:IPR018467
KEGG:ath:AT1G72450KO:K13464OMA:KEANHVAPaxDb:Q9C9E3
Pfam:PF06200Pfam:PF09425Pfam:Q9C9E3Pfscan:PS51320
PhylomeDB:Q9C9E3PIR:F96748PRIDE:Q9C9E3PRO:PR:Q9C9E3
PROSITE:PS51320Proteomes:UP000006548RefSeq:NP_565043.1SMART:SM00979
STRING:3702.AT1G72450.1TAIR:AT1G72450tair10-symbols:JAZ6tair10-symbols:TIFY11B
UniGene:At.25041UniProt:Q9C9E3
Coordinates (TAIR10) chr1:-:27274336..27276136
Molecular Weight (calculated) 29851.40 Da
IEP (calculated) 9.87
GRAVY (calculated) -0.78
Length 269 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTGQAPEKS NFSQRCSLLS RYLKEKGSFG NINMGLARKS DLELAGKFDL KGQQNVIKKV ETSETRPFKL IQKFSIGEAS TSTEDKAIYI DLSEPAKVAP
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)