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AT1G72440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CCAAT-binding factor
Curator
Summary (TAIR10)
Encodes SLOW WALKER2 (SWA2), a NOC1/Mak21 homologue. Essential for coordinated cell cycle progression during female gametophyte development.
Computational
Description (TAIR10)
embryo sac development arrest 25 (EDA25); INVOLVED IN: polar nucleus fusion, embryo sac development; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5593eggNOG:KOG2038EMBL:CP002684EnsemblPlants:AT1G72440EnsemblPlants:AT1G72440.1entrez:843576GeneID:843576
GO:GO:0005730GO:GO:0009553GO:GO:0010197Gramene:AT1G72440.1hmmpanther:PTHR12048InParanoid:F4IDC2InterPro:IPR005612
InterPro:IPR016024iPTMnet:F4IDC2KEGG:ath:AT1G72440KO:K14832OMA:KKRDPQYPaxDb:F4IDC2Pfam:PF03914
PRIDE:F4IDC2ProteinModelPortal:F4IDC2Proteomes:UP000006548RefSeq:NP_177388.2STRING:3702.AT1G72440.1SUPFAM:SSF48371TAIR:AT1G72440
tair10-symbols:EDA25tair10-symbols:SWA2UniGene:At.35098UniProt:F4IDC2
Coordinates (TAIR10) chr1:-:27268325..27273596
Molecular Weight (calculated) 117030.00 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.78
Length 1043 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSKIKPLSKS SQDLSLLTSD IASFASSIGL ASALPSSGFN DTDFRKPAKS KTQKRKKPKK DQQHKDEDEE GEPKSNIGNE KGKDFGARKQ NKDAPVKQTL
0101: QPKPKPGFLS IDDESTGYKK KRFDEFKSLP KLPLVKASLL SSEWYNDAAE FEEKVFGGRK VAVANKEDFK GVVEKKRELG ERLMWQYAED FATSKGKGGD
0201: MKMVISAQKS GTVADKITAF EIMVGENPIA NMRSLDALLG MVTSKVGKRF AFKGLKALSE ILIRLLPDRK LKSLLQRPLN IIPENKDGYS LLLFWYWEDC
0301: LKQRYERFVT ALDESSKDML PELKDKALKT IYFMLTSKSE QERKLLVSLV NKLGDPQNKS ASNADYHLTN LLADHPNMKA VVIDEVDSFL FRPHLGLRAK
0401: YHAVNFLSQI RLSHKGEDPK VAKRLIDVYF ALFKVLTTEA NRKQGADDKG AADKKKSNPK DTKQEVSTDS PIELDSRILS ALLTGVNRAF PYVSTDEADD
0501: IIESQTPVLF KLVHSANFNV GVQSLMLLDK ISSKNKIVSD RFYRALYSKL LLPSAMNSSK AEMFIGLLLR AMKNDINIKR VAAFSKRVLQ VALQQPPQYA
0601: CGCLFLLSEV LKSRPPLWKM VVQRESVEEE EDIEHFEDVI EGDDVDPNKK AENDENVVEV DHDGVEKSSR DGDSSSDDEE ALAIRLSDEE DDNASDDSEE
0701: LIRNETPQLE EVMEVSNDME KRSQPPMRPS SLPGGYDPRH REPSYCNADR ASWWELGVLS KHAHPSVATM AGTLLSGTNI VYNGNPLNDL SLTAFLDKFM
0801: EKKPKQNTWH GGSQIEPSKK LDMSNRVIGA EILSLAEGDV APEDLVFHKF YVNKMTSTKQ SKKKKKKKLP EEEAAEELYD VNDGDGGENY DSDVEFEAGD
0901: ESDNEEIENM LDDVDDNAVE EEGGEYDYDD LDGVAGEDDE ELVADVSDAE MDTDMDMDLI DDEDDNNVDD DGTGDGGDDD SDGDDGRSKK KKKEKRKRKS
1001: PFASLEEYKH LIDQDEKEDS KTKRKATSEP TKKKKKKKSK ASE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)