AT1G72440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CCAAT-binding factor | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes SLOW WALKER2 (SWA2), a NOC1/Mak21 homologue. Essential for coordinated cell cycle progression during female gametophyte development. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
embryo sac development arrest 25 (EDA25); INVOLVED IN: polar nucleus fusion, embryo sac development; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27268325..27273596 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117030.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||
| Length | 1043 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSKIKPLSKS SQDLSLLTSD IASFASSIGL ASALPSSGFN DTDFRKPAKS KTQKRKKPKK DQQHKDEDEE GEPKSNIGNE KGKDFGARKQ NKDAPVKQTL 0101: QPKPKPGFLS IDDESTGYKK KRFDEFKSLP KLPLVKASLL SSEWYNDAAE FEEKVFGGRK VAVANKEDFK GVVEKKRELG ERLMWQYAED FATSKGKGGD 0201: MKMVISAQKS GTVADKITAF EIMVGENPIA NMRSLDALLG MVTSKVGKRF AFKGLKALSE ILIRLLPDRK LKSLLQRPLN IIPENKDGYS LLLFWYWEDC 0301: LKQRYERFVT ALDESSKDML PELKDKALKT IYFMLTSKSE QERKLLVSLV NKLGDPQNKS ASNADYHLTN LLADHPNMKA VVIDEVDSFL FRPHLGLRAK 0401: YHAVNFLSQI RLSHKGEDPK VAKRLIDVYF ALFKVLTTEA NRKQGADDKG AADKKKSNPK DTKQEVSTDS PIELDSRILS ALLTGVNRAF PYVSTDEADD 0501: IIESQTPVLF KLVHSANFNV GVQSLMLLDK ISSKNKIVSD RFYRALYSKL LLPSAMNSSK AEMFIGLLLR AMKNDINIKR VAAFSKRVLQ VALQQPPQYA 0601: CGCLFLLSEV LKSRPPLWKM VVQRESVEEE EDIEHFEDVI EGDDVDPNKK AENDENVVEV DHDGVEKSSR DGDSSSDDEE ALAIRLSDEE DDNASDDSEE 0701: LIRNETPQLE EVMEVSNDME KRSQPPMRPS SLPGGYDPRH REPSYCNADR ASWWELGVLS KHAHPSVATM AGTLLSGTNI VYNGNPLNDL SLTAFLDKFM 0801: EKKPKQNTWH GGSQIEPSKK LDMSNRVIGA EILSLAEGDV APEDLVFHKF YVNKMTSTKQ SKKKKKKKLP EEEAAEELYD VNDGDGGENY DSDVEFEAGD 0901: ESDNEEIENM LDDVDDNAVE EEGGEYDYDD LDGVAGEDDE ELVADVSDAE MDTDMDMDLI DDEDDNNVDD DGTGDGGDDD SDGDDGRSKK KKKEKRKRKS 1001: PFASLEEYKH LIDQDEKEDS KTKRKATSEP TKKKKKKKSK ASE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)