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AT1G72390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJMCeggNOG:ENOG4111YDQEMBL:CP002684EnsemblPlants:AT1G72390EnsemblPlants:AT1G72390.1entrez:843571GeneID:843571
GO:GO:0000124GO:GO:0003712Gramene:AT1G72390.1hmmpanther:PTHR10799hmmpanther:PTHR10799:SF783InParanoid:F4IDB2iPTMnet:F4IDB2
KEGG:ath:AT1G72390OMA:INASQEKPaxDb:F4IDB2Pfam:PF12090PRIDE:F4IDB2ProteinModelPortal:F4IDB2Proteomes:UP000006548
RefSeq:NP_177383.5STRING:3702.AT1G72390.1TAIR:AT1G72390UniGene:At.27654UniProt:F4IDB2
Coordinates (TAIR10) chr1:+:27245455..27251218
Molecular Weight (calculated) 143319.00 Da
IEP (calculated) 9.98
GRAVY (calculated) -0.63
Length 1325 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGVSFKISKV GRKFRPKIST ELATPDSPKA IVLSGKPKAT DDSNIGDVSG FSKPSLPDIS PDHEVSFILS LYPNGYSIGK TSEAMQQISF RDVPKVLHPY
0101: DRAAEGLLSA IEAGRLPGDI LEDIPCKFVD GVVICEVHDY RKHTSSQVSP VINKLRLKMS LENVVKDIPS MSDNSWTYGD LMEVESRILK ALQPELCLDP
0201: LPRLDRLSKN PLTAKLDLSL STLRRKRLRQ MAEVTVMSQN KIQGKKVCID RLPESSERGN LPGHLIMQQT NNNQAIQNLG TNMLAGLRSQ PLQDAPNSSL
0301: ALVPPQQQRY MGIGSTRNTQ DQGSNSVSVS GASPGGLDAM LPYGSDSMNP GTSFHRKRES QEGQMSSMPG LNKRTRVSHM GPDGVPQQQL GQRMDGLHGS
0401: DTNWKNTLLQ HQDMLGRSIQ YPNTSIQRFS PHQMEGVMNQ EGGPMQFPAS QQGGMKYTSK EEPFETGKID GGTRNNIPGV GSDANDLDPR IQSRMPHNAF
0501: IRSNFPQTSW NVNPGQQIEK EPKKEEQFSR RISAQSPRLS AGGPPQSPLS SKSGEFSGGS MGTHYGAVAA AQKDKAVTSI PAIGATQSVG SSANEAMQQR
0601: QHQAQMAAKR RTNSLPKTQV ISTVGSPVSV NTISVPVNAR SPSVGPQTLG DHAILDRFSK IERVAARYQL NCKKHKVDEY SRRPRVYAKQ PLTVCLSNLS
0701: NEEVFKDEDE ALSKSIFGGS MNTYKTRVIH FGQMERVMQG SVPSFIPRNR TRLVMSEKAV DGTVAWYQGD VDEGDVFQAE DFLLALPNTH IADLLATQFK
0801: SLMAREGYMI EEHIMAKPNR GDTGPISSHP NSAGGYPRGY SANDMQQYGD AVAGQASGEA SKHGNTGNTP NNSTQNILAN ARMVPPTNSQ ALQMSQGLLS
0901: GVSMPMQPQQ LDPQQSALLS SHSQQKNQQS MFTQQQHPQM QRPSMILPTN PLSAINSMSQ SSGMQPGGQM ANKYSPLQLQ MLQQQQQAAV QKKIMMGLGS
1001: GVGMGMGMGM GMGMGSMGNS IAGLGALGNQ LNMAGRGMGG TGISSSMSVP GIGNMGQNPM NLNPASNLNA ISQQLRSGAL TPQQNALFTQ IRMGMANRGG
1101: VMGAPQTGIS GVSGTRQMHP SSAGLSMLDQ NRANLQRAAA MGNMGPPKLM PGMMNLYMNQ QQQQQQLQQQ PQQQQLQHQQ QLQQPMSQPS QQLAQSPQQQ
1201: QQLQQHEQPQ QAQQQQQATA SPLQSVLSPP QVGSPSAGIT QQQLQQSSPQ QMSQRTPMSP QQVNQRTPMS PQISSGAMHP MSTSNLEGCP ASPQLSSQTM
1301: GSVGSITNSP MELQGPKNNS AGNNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)