AT1G72390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27245455..27251218 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 143319.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.98 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||
| Length | 1325 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGVSFKISKV GRKFRPKIST ELATPDSPKA IVLSGKPKAT DDSNIGDVSG FSKPSLPDIS PDHEVSFILS LYPNGYSIGK TSEAMQQISF RDVPKVLHPY 0101: DRAAEGLLSA IEAGRLPGDI LEDIPCKFVD GVVICEVHDY RKHTSSQVSP VINKLRLKMS LENVVKDIPS MSDNSWTYGD LMEVESRILK ALQPELCLDP 0201: LPRLDRLSKN PLTAKLDLSL STLRRKRLRQ MAEVTVMSQN KIQGKKVCID RLPESSERGN LPGHLIMQQT NNNQAIQNLG TNMLAGLRSQ PLQDAPNSSL 0301: ALVPPQQQRY MGIGSTRNTQ DQGSNSVSVS GASPGGLDAM LPYGSDSMNP GTSFHRKRES QEGQMSSMPG LNKRTRVSHM GPDGVPQQQL GQRMDGLHGS 0401: DTNWKNTLLQ HQDMLGRSIQ YPNTSIQRFS PHQMEGVMNQ EGGPMQFPAS QQGGMKYTSK EEPFETGKID GGTRNNIPGV GSDANDLDPR IQSRMPHNAF 0501: IRSNFPQTSW NVNPGQQIEK EPKKEEQFSR RISAQSPRLS AGGPPQSPLS SKSGEFSGGS MGTHYGAVAA AQKDKAVTSI PAIGATQSVG SSANEAMQQR 0601: QHQAQMAAKR RTNSLPKTQV ISTVGSPVSV NTISVPVNAR SPSVGPQTLG DHAILDRFSK IERVAARYQL NCKKHKVDEY SRRPRVYAKQ PLTVCLSNLS 0701: NEEVFKDEDE ALSKSIFGGS MNTYKTRVIH FGQMERVMQG SVPSFIPRNR TRLVMSEKAV DGTVAWYQGD VDEGDVFQAE DFLLALPNTH IADLLATQFK 0801: SLMAREGYMI EEHIMAKPNR GDTGPISSHP NSAGGYPRGY SANDMQQYGD AVAGQASGEA SKHGNTGNTP NNSTQNILAN ARMVPPTNSQ ALQMSQGLLS 0901: GVSMPMQPQQ LDPQQSALLS SHSQQKNQQS MFTQQQHPQM QRPSMILPTN PLSAINSMSQ SSGMQPGGQM ANKYSPLQLQ MLQQQQQAAV QKKIMMGLGS 1001: GVGMGMGMGM GMGMGSMGNS IAGLGALGNQ LNMAGRGMGG TGISSSMSVP GIGNMGQNPM NLNPASNLNA ISQQLRSGAL TPQQNALFTQ IRMGMANRGG 1101: VMGAPQTGIS GVSGTRQMHP SSAGLSMLDQ NRANLQRAAA MGNMGPPKLM PGMMNLYMNQ QQQQQQLQQQ PQQQQLQHQQ QLQQPMSQPS QQLAQSPQQQ 1201: QQLQQHEQPQ QAQQQQQATA SPLQSVLSPP QVGSPSAGIT QQQLQQSSPQ QMSQRTPMSP QQVNQRTPMS PQISSGAMHP MSTSNLEGCP ASPQLSSQTM 1301: GSVGSITNSP MELQGPKNNS AGNNS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)