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AT1G72370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15028209 (2004): plastid
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 40s ribosomal protein SA
Curator
Summary (TAIR10)
acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.
Computational
Description (TAIR10)
40s ribosomal protein SA (P40); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, mature ribosome assembly, translation, response to osmotic stress; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA B (TAIR:AT3G04770.2); Has 3789 Blast hits to 3785 proteins in 1365 species: Archae - 262; Bacteria - 1853; Metazoa - 688; Fungi - 331; Plants - 191; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).
Protein Annotations
BioGrid:28789eggNOG:COG0052eggNOG:KOG0830EMBL:AC016529EMBL:AY054211EMBL:AY058885EMBL:AY065096
EMBL:AY079041EMBL:AY087976EMBL:AY114561EMBL:AY136324EMBL:BT000421EMBL:CP002684EMBL:U01955
EMBL:X69056EMBL:X89366EMBL:Y10379EnsemblPlants:AT1G72370EnsemblPlants:AT1G72370.1entrez:843569ExpressionAtlas:Q08682
GeneID:843569Genevisible:Q08682GO:GO:0000028GO:GO:0000447GO:GO:0000461GO:GO:0003735GO:GO:0005634
GO:GO:0005737GO:GO:0005829GO:GO:0005886GO:GO:0006407GO:GO:0006412GO:GO:0006970GO:GO:0009506
GO:GO:0009507GO:GO:0009651GO:GO:0015935GO:GO:0016020GO:GO:0022626GO:GO:0022627GO:GO:0030686
HAMAP:MF_03015hmmpanther:PTHR11489hmmpanther:PTHR11489:SF9HOGENOM:HOG000232073InParanoid:Q08682IntAct:Q08682InterPro:IPR001865
InterPro:IPR005707InterPro:IPR018130InterPro:IPR023591InterPro:IPR027498iPTMnet:Q08682OMA:HNKPYVYPANTHER:PTHR11489
PaxDb:Q08682Pfam:PF00318Pfam:Q08682PhylomeDB:Q08682PIR:F96747PIR:S71247PRIDE:Q08682
PRINTS:PR00395PRO:PR:Q08682PROSITE:PS00962PROSITE:PS00963ProteinModelPortal:Q08682Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_177381.1scanprosite:PS00962scanprosite:PS00963SMR:Q08682STRING:3702.AT1G72370.1SUPFAM:SSF52313TAIR:AT1G72370
tair10-symbols:AP40tair10-symbols:P40tair10-symbols:RP40tair10-symbols:RPSAATIGRfam:TIGR01012TIGRFAMs:TIGR01012UniGene:At.22576
UniGene:At.35111UniGene:At.70162UniProt:Q08682
Coordinates (TAIR10) chr1:-:27243148..27244842
Molecular Weight (calculated) 32293.20 Da
IEP (calculated) 4.78
GRAVY (calculated) -0.32
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)