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AT1G72300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich receptor-like protein kinase family protein
Curator
Summary (TAIR10)
Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of PSY1. PSY1 is an 18-aa tyrosine-sulfated glycopeptide encoded by AT5G58650 that promotes cellular proliferation and expansion.
Computational
Description (TAIR10)
Leucine-rich receptor-like protein kinase family protein; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: receptor like protein 2 (TAIR:AT1G17240.1); Has 184889 Blast hits to 127916 proteins in 4307 species: Archae - 126; Bacteria - 18793; Metazoa - 54455; Fungi - 9661; Plants - 78637; Viruses - 498; Other Eukaryotes - 22719 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0515eggNOG:COG4886eggNOG:ENOG410IPZ3EMBL:FJ708678
EnsemblPlants:AT1G72300EnsemblPlants:AT1G72300.1entrez:843562ExpressionAtlas:C0LGI8
Gene3D:2.60.120.200Gene3D:3.80.10.10GeneID:843562GO:GO:0004674
GO:GO:0005524GO:GO:0016021Gramene:AT1G72300.1hmmpanther:PTHR27000
hmmpanther:PTHR27000:SF208InterPro:IPR000719InterPro:IPR001245InterPro:IPR001611
InterPro:IPR003591InterPro:IPR008271InterPro:IPR011009InterPro:IPR013210
InterPro:IPR013320InterPro:IPR017441InterPro:IPR032675KEGG:ath:AT1G72300
ncoils:CoilOMA:IFQNRTHPaxDb:C0LGI8Pfam:PF00560
Pfam:PF07714Pfam:PF08263Pfam:Q9C7S5Pfscan:PS50011
Pfscan:PS51450PhylomeDB:C0LGI8PRIDE:C0LGI8PROSITE:PS00107
PROSITE:PS00108PROSITE:PS50011PROSITE:PS51450ProteinModelPortal:C0LGI8
ProteinModelPortal:Q9C7S5RefSeq:NP_177374.1scanprosite:PS00107scanprosite:PS00108
SMART:SM00220SMART:SM00369SMR:C0LGI8STRING:3702.AT1G72300.1
SUPFAM:SSF52047SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT1G72300
TMHMM:TMhelixUniGene:At.35115UniProt:C0LGI8UniProt:Q9C7S5
Coordinates (TAIR10) chr1:-:27217679..27220966
Molecular Weight (calculated) 121528.00 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.07
Length 1095 amino acids
Sequence (TAIR10)
(BLAST)
0001: MIDEKMRSKS IGPFVRQVKP LSPHMVLFVL LYVLSISVFF LTVSEAVCNL QDRDSLLWFS GNVSSPVSPL HWNSSIDCCS WEGISCDKSP ENRVTSIILS
0101: SRGLSGNLPS SVLDLQRLSR LDLSHNRLSG PLPPGFLSAL DQLLVLDLSY NSFKGELPLQ QSFGNGSNGI FPIQTVDLSS NLLEGEILSS SVFLQGAFNL
0201: TSFNVSNNSF TGSIPSFMCT ASPQLTKLDF SYNDFSGDLS QELSRCSRLS VLRAGFNNLS GEIPKEIYNL PELEQLFLPV NRLSGKIDNG ITRLTKLTLL
0301: ELYSNHIEGE IPKDIGKLSK LSSLQLHVNN LMGSIPVSLA NCTKLVKLNL RVNQLGGTLS AIDFSRFQSL SILDLGNNSF TGEFPSTVYS CKMMTAMRFA
0401: GNKLTGQISP QVLELESLSF FTFSDNKMTN LTGALSILQG CKKLSTLIMA KNFYDETVPS NKDFLRSDGF PSLQIFGIGA CRLTGEIPAW LIKLQRVEVM
0501: DLSMNRFVGT IPGWLGTLPD LFYLDLSDNF LTGELPKELF QLRALMSQKA YDATERNYLE LPVFVNPNNV TTNQQYNQLS SLPPTIYIKR NNLTGTIPVE
0601: VGQLKVLHIL ELLGNNFSGS IPDELSNLTN LERLDLSNNN LSGRIPWSLT GLHFLSYFNV ANNTLSGPIP TGTQFDTFPK ANFEGNPLLC GGVLLTSCDP
0701: TQHSTTKMGK GKVNRTLVLG LVLGLFFGVS LILVLLALLV LSKRRVNPGD SENAELEINS NGSYSEVPPG SDKDISLVLL FGNSRYEVKD LTIFELLKAT
0801: DNFSQANIIG CGGFGLVYKA TLDNGTKLAV KKLTGDYGMM EKEFKAEVEV LSRAKHENLV ALQGYCVHDS ARILIYSFME NGSLDYWLHE NPEGPAQLDW
0901: PKRLNIMRGA SSGLAYMHQI CEPHIVHRDI KSSNILLDGN FKAYVADFGL SRLILPYRTH VTTELVGTLG YIPPEYGQAW VATLRGDVYS FGVVMLELLT
1001: GKRPMEVFRP KMSRELVAWV HTMKRDGKPE EVFDTLLRES GNEEAMLRVL DIACMCVNQN PMKRPNIQQV VDWLKNIEAE KNQNNREEPE EEEET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)