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AT1G72170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Domain of unknown function (DUF543)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Domain of unknown function (DUF543); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF543 (InterPro:IPR007512); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF543) (TAIR:AT1G22520.1); Has 92 Blast hits to 92 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4112535eggNOG:KOG4604EMBL:AK118930EMBL:BT005659
EMBL:CP002684EnsemblPlants:AT1G72170EnsemblPlants:AT1G72170.1entrez:843548
GeneID:843548GO:GO:0005739Gramene:AT1G72170.1hmmpanther:PTHR21304
hmmpanther:PTHR21304:SF0IntAct:Q8GWC7InterPro:IPR007512KEGG:ath:AT1G72170
KO:K17784OMA:WASTAFGPANTHER:PTHR21304Pfam:PF04418
Proteomes:UP000006548RefSeq:NP_565036.1STRING:3702.AT1G72170.1TAIR:AT1G72170
UniGene:At.35132UniProt:Q8GWC7
Coordinates (TAIR10) chr1:+:27156403..27157516
Molecular Weight (calculated) 10752.50 Da
IEP (calculated) 4.65
GRAVY (calculated) -0.09
Length 102 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKKDSVPP EYDVNAKWDA CLDLTVRRFV YSSLGGAFAG LLFFRSPVTR WASIALGAGI GIGSAYSDCS RAFDSPSSSS ANLAAPKNNI TETSPVSQAA
101: DE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)