AT1G72140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G22540.1); Has 7231 Blast hits to 7080 proteins in 1330 species: Archae - 0; Bacteria - 3541; Metazoa - 585; Fungi - 456; Plants - 2171; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27141877..27144346 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61389.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.97 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.39 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 555 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTSIGDNET GAIVSNENVE FSVDFRGNPS IRSSSGAWKS SGFTMCAEVA EKFAYFGIAS NLITYFTEAL GESTAVAASN VNLWLGTAAF LPLIWGSIAD 101: SFLGRFRTIL LTSSFYIMGL GLLTFSATIP SLCNDQETRE SCVSQVKVII FFCALYLIAL GEGGFKVCLR AFGADQFDEQ DPNESKAKSS YFNWLYFAIS 201: IGILTTRLVT NYVQENLSWA LGYAIPCLSM MLALFLFLLG IKTYRFSTGG EGRQGKKHDN PFVRIGRVFV AAARNRRQTP SDTCLLLPNE STKKFRFLDR 301: AVISCDSYEV EEAKAVLSLI PIWLCSLVFG IVFAQSPTFF TKQGSTMDRS ISSTLQVPAA TLQCFISLAI LVFIPIYDRL FVPIARSITR KPAGITTLQR 401: ISTGIFLSII SMVIAALVEM KRLKTARDHG LVDSPKATVP MSVCWLIPQY ILFGVSDVFT MVGLQEFFYG EVPPQLRSMG LALYLSIIGI GNFLSSFMVS 501: VIEEATSQSG QVSWFSNNLN QAHLDYFYWL LACLSSLAFI FTVYFAKSYL YNSPK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)