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AT1G72090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21433285 (2011): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Methylthiotransferase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Methylthiotransferase; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, iron-sulfur cluster binding, catalytic activity; INVOLVED IN: metabolic process, RNA modification; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839), Aldolase-type TIM barrel (InterPro:IPR013785), Methylthiotransferase, conserved site (InterPro:IPR020612), Methylthiotransferase, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), MiaB-like tRNA modifying enzyme, archaeal-type (InterPro:IPR006466); BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT4G36390.1); Has 15738 Blast hits to 15705 proteins in 2423 species: Archae - 403; Bacteria - 9758; Metazoa - 296; Fungi - 1; Plants - 135; Viruses - 0; Other Eukaryotes - 5145 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2277-MONOMEReggNOG:COG0621eggNOG:KOG4355EMBL:AC069273EMBL:AF367274EMBL:BT002712EMBL:CP002684
EnsemblPlants:AT1G72090EnsemblPlants:AT1G72090.1entrez:843540Gene3D:3.80.30.20GeneID:843540GO:GO:0005783GO:GO:0009451
GO:GO:0016020GO:GO:0016021GO:GO:0016740GO:GO:0051539Gramene:AT1G72090.1hmmpanther:PTHR11918hmmpanther:PTHR11918:SF45
HOGENOM:HOG000224768InterPro:IPR002792InterPro:IPR005839InterPro:IPR006466InterPro:IPR006638InterPro:IPR007197InterPro:IPR013848
InterPro:IPR020612InterPro:IPR023404InterPro:IPR023970KEGG:ath:AT1G72090KO:K15865OMA:PSMKIPGPANTHER:PTHR11918
Pfam:PF00919Pfam:PF04055Pfscan:PS50926Pfscan:PS51449PhylomeDB:Q9C7H2PIR:B96744PROSITE:PS01278
PROSITE:PS50926PROSITE:PS51449Proteomes:UP000006548RefSeq:NP_565035.1scanprosite:PS01278SMART:SM00729SMR:Q9C7H2
STRING:3702.AT1G72090.1SUPFAM:SSF102114TAIR:AT1G72090TIGRfam:TIGR00089TIGRfam:TIGR01578TIGRFAMs:TIGR00089TIGRFAMs:TIGR01578
TMHMM:TMhelixUniGene:At.17477UniProt:Q9C7H2
Coordinates (TAIR10) chr1:+:27123617..27126767
Molecular Weight (calculated) 65499.80 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.12
Length 601 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDIEDLLAG GVGGAPPGFR LPLNAVGINP KTNKSKRISS KPDQITASNR DSLAPPSMKI PGTQTIYIKT FGCSHNQSDS EYMAGQLSAF GYALTEVPEE
101: ADLWLINTCT VKSPSQSAMS TLITRGRSGK KPLVIAGCVP QGSRDLKELE GVSVVGVQQI DRVVEIVEET LKGHEVRLLT RKTLPALDLP KVRRNNFIEI
201: LPINVGCLGA CTYCKTKHAR GHLGSYTVDS LVERVRTVIS EGVKEIWLSS EDTGAYGRDI GVNLPILLNA IVKELPSDQS TMLRIGMTNP PFILEHLKEI
301: AAVLRHPCVY TFLHVPVQSG SDSVLTAMNR EYTASEFRTV VDTLTELVPG MQIATDIICG FPGETDEDFS QTVELIKDYK FPQVHISQFY PRPGTPAAKM
401: KKVQSKIVKQ RSRELTSVFE AFAPYTGMEC REERIWITEV ATDGIHLVGH TKGYVQVLVT GPESMLGTSA MARITSVGRW SVFGEVIETF SSANRETKSR
501: EETKLPCSSN VSTCETCTCS AESCGEERSG EACNISGNIS GQDDNKGKSK KEEKEVQEVV VPGSSVANWG FIDKALVCGV FVSSVTILVL LISIACRVLL
601: R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)