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AT1G72080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EMBL:DQ446420EnsemblPlants:AT1G72080EnsemblPlants:AT1G72080.1
entrez:843539GeneID:843539GO:GO:0006396Gramene:AT1G72080.1
hmmpanther:PTHR23338hmmpanther:PTHR23338:SF17InterPro:IPR027141KEGG:ath:AT1G72080
PANTHER:PTHR23338Proteomes:UP000006548RefSeq:NP_177353.2TAIR:AT1G72080
UniGene:At.52484UniProt:Q1PFE3
Coordinates (TAIR10) chr1:-:27120304..27122761
Molecular Weight (calculated) 27017.10 Da
IEP (calculated) 11.49
GRAVY (calculated) -1.34
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNPSNQSSQ EQPQRCVVLA LPAISNTSLR HRYGLGRRGG NNRNRSRGRD DNQSPSNGGR GRGRGRSRRR SRSPSHSNGG REPPFATINT EEHLTMQIES
101: PSTIINTEER RAGDDDGSRS RGRGRGRGRG RGRGRGRGRG RGRGRNRSRS RSPSHSNGGR EPPTTTLNTE DHLTMQIEPP STIINRENGT DANDNVVAVN
201: NIESDCKIDE TVPPKTDEEI LEDEDDIRSL LDKLPIPSMF YLGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)