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AT1G71970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22680.1); Has 58 Blast hits to 58 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JDGPeggNOG:ENOG4111DMEEMBL:AC021665EMBL:AY102115EMBL:AY143823EMBL:CP002684EnsemblPlants:AT1G71970
EnsemblPlants:AT1G71970.1entrez:843528GeneID:843528Gramene:AT1G71970.1hmmpanther:PTHR33696hmmpanther:PTHR33696:SF1HOGENOM:HOG000093002
IntAct:Q9C8W5InterPro:IPR007789KEGG:ath:AT1G71970OMA:ASSEHRWPfam:PF05097PhylomeDB:Q9C8W5PIR:F96742
Proteomes:UP000006548RefSeq:NP_177342.1TAIR:AT1G71970UniGene:At.18058UniProt:Q9C8W5
Coordinates (TAIR10) chr1:+:27093099..27093776
Molecular Weight (calculated) 24616.70 Da
IEP (calculated) 10.53
GRAVY (calculated) -0.74
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSLRTRNVS KRSDPINFPA KSSISSRRSL SSSSSFSSFS SCSSSSLVFP GDSPLNSPAT PLRLLGVPFS WEQLPGKPKD YSHRLNNRRN NESSNLLLPL
101: PPHRNISFPA TGKKPKPNNS SKKNSFPVTG KDPFAAALLE CSKDEGTNSD NDDDVDGVED VDRRFRGNSG GSSKVLSKNS IGDRFGLVNL YGSCRRTCAV
201: TESIVYLPRA RKAASYDNLL PRRRC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)