suba logo
AT1G71850.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin carboxyl-terminal hydrolase family protein; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G24320.1); Has 758 Blast hits to 736 proteins in 101 species: Archae - 0; Bacteria - 6; Metazoa - 59; Fungi - 84; Plants - 429; Viruses - 8; Other Eukaryotes - 172 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFZReggNOG:ENOG410Y9ZUEMBL:AC012654EMBL:AK226624EMBL:CP002684EnsemblPlants:AT1G71850EnsemblPlants:AT1G71850.1
entrez:843515GeneID:843515GO:GO:0005739GO:GO:0016787Gramene:AT1G71850.1hmmpanther:PTHR31476hmmpanther:PTHR31476:SF16
InterPro:IPR021099KEGG:ath:AT1G71850OMA:LELVCWSPfam:PF11955PhylomeDB:Q9M9G1PIR:B96741Proteomes:UP000006548
RefSeq:NP_177330.1STRING:3702.AT1G71850.1TAIR:AT1G71850UniGene:At.52483UniProt:Q9M9G1
Coordinates (TAIR10) chr1:-:27024875..27026287
Molecular Weight (calculated) 53883.40 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.65
Length 470 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSIFRSISI RRHSGHRTFA DTSAVEDTYK FVRDRGLDHA VEREKNLRPL LSIKDLIRSE PAKSVPISVI TSQKDSLRVP LRPIEFIRSF PSVFQEFLPG
101: GIGIHPHISL TPEILNHDAD EQLVYGSETY KQGLADRLLK LLMINRINKI PLEILDLLKW DLGLPKDYVE TMVPEFPDYF RVIKSKLRGC SGELELVCWS
201: NEHAVSVLEK KARTLRKGEY TKGSAIAFPM KFSNGFVVDK KMKKWIDDWQ KLPYISPYEN ALHLSATSDE SDKWAAAVLH EIMNLFVSKK VEKDAILHLG
301: EFMGLRSRFK RVLHNHPGIF YLSSKLRTHT VVLRDGYKRG MLIESNELVT SRNRYMKLMN TVKKDNKAVS SSSKKEDKGK VEGEVCDTDA KAENDDISGS
401: DVEDDRQGDF VDDDEDDDEV DQNQDLERGR RNSSPRSGRR SFGNSGSRDK AQSRRSKISL KTEKKRSRMY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)