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AT1G71830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 11397085
SwissProt : endoplasmic reticulum 16381842
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 11397085
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : somatic embryogenesis receptor-like kinase 1
Curator
Summary (TAIR10)
Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later
Computational
Description (TAIR10)
somatic embryogenesis receptor-like kinase 1 (SERK1); FUNCTIONS IN: transmembrane receptor protein serine/threonine kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane, protein complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: somatic embryogenesis receptor-like kinase 2 (TAIR:AT1G34210.1); Has 181670 Blast hits to 121787 proteins in 4268 species: Archae - 123; Bacteria - 18224; Metazoa - 45784; Fungi - 8994; Plants - 88758; Viruses - 411; Other Eukaryotes - 19376 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G71830-MONOMERBioGrid:28733DIP:DIP-38028NEC:2.7.10.1EC:2.7.11.1eggNOG:ENOG410IGSHeggNOG:ENOG410ZNK7
EMBL:A67815EMBL:A67827EMBL:AC012654EMBL:AY048200EMBL:BT002217EMBL:CP002684EMBL:FJ708676
EnsemblPlants:AT1G71830EnsemblPlants:AT1G71830.1entrez:843513Gene3D:2.60.120.200Gene3D:3.80.10.10GeneID:843513Genevisible:Q94AG2
GO:GO:0004675GO:GO:0004714GO:GO:0005524GO:GO:0005789GO:GO:0005886GO:GO:0006468GO:GO:0007030
GO:GO:0007178GO:GO:0009556GO:GO:0009742GO:GO:0009793GO:GO:0010152GO:GO:0010227GO:GO:0016021
GO:GO:0033612GO:GO:0042802GO:GO:0046777Gramene:AT1G71830.1hmmpanther:PTHR27001hmmpanther:PTHR27001:SF224HOGENOM:HOG000116554
InParanoid:Q94AG2IntAct:Q94AG2InterPro:IPR000719InterPro:IPR001611InterPro:IPR008271InterPro:IPR011009InterPro:IPR013210
InterPro:IPR013320InterPro:IPR017441InterPro:IPR032675iPTMnet:Q94AG2KEGG:ath:AT1G71830KO:K13418OMA:WQKVEIL
PaxDb:Q94AG2PDB:4LSCPDB:4LSXPDB:4Z64PDBsum:4LSCPDBsum:4LSXPDBsum:4Z64
Pfam:PF00069Pfam:PF00560Pfam:PF08263Pfam:Q94AG2Pfscan:PS50011PhylomeDB:Q94AG2PIR:H96740
PRIDE:Q94AG2PRO:PR:Q94AG2PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:Q94AG2Proteomes:UP000006548
RefSeq:NP_177328.1scanprosite:PS00107scanprosite:PS00108SMART:SM00220SMR:Q94AG2STRING:3702.AT1G71830.1SUPFAM:SSF52058
SUPFAM:SSF56112TAIR:AT1G71830tair10-symbols:ATSERK1tair10-symbols:SERK1TMHMM:TMhelixUniGene:At.12027UniGene:At.72107
UniProt:Q94AG2
Coordinates (TAIR10) chr1:+:27018575..27021842
Molecular Weight (calculated) 69026.00 Da
IEP (calculated) 5.19
GRAVY (calculated) -0.11
Length 625 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSYVVFIL LSLILLPNHS LWLASANLEG DALHTLRVTL VDPNNVLQSW DPTLVNPCTW FHVTCNNENS VIRVDLGNAE LSGHLVPELG VLKNLQYLEL
101: YSNNITGPIP SNLGNLTNLV SLDLYLNSFS GPIPESLGKL SKLRFLRLNN NSLTGSIPMS LTNITTLQVL DLSNNRLSGS VPDNGSFSLF TPISFANNLD
201: LCGPVTSHPC PGSPPFSPPP PFIQPPPVST PSGYGITGAI AGGVAAGAAL LFAAPAIAFA WWRRRKPLDI FFDVPAEEDP EVHLGQLKRF SLRELQVASD
301: GFSNKNILGR GGFGKVYKGR LADGTLVAVK RLKEERTPGG ELQFQTEVEM ISMAVHRNLL RLRGFCMTPT ERLLVYPYMA NGSVASCLRE RPPSQPPLDW
401: PTRKRIALGS ARGLSYLHDH CDPKIIHRDV KAANILLDEE FEAVVGDFGL AKLMDYKDTH VTTAVRGTIG HIAPEYLSTG KSSEKTDVFG YGIMLLELIT
501: GQRAFDLARL ANDDDVMLLD WVKGLLKEKK LEMLVDPDLQ TNYEERELEQ VIQVALLCTQ GSPMERPKMS EVVRMLEGDG LAEKWDEWQK VEILREEIDL
601: SPNPNSDWIL DSTYNLHAVE LSGPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)