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AT1G71820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SEC6
Curator
Summary (TAIR10)
Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
Computational
Description (TAIR10)
SEC6; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: cytosol, plasma membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex component Sec6 (InterPro:IPR010326); Has 534 Blast hits to 527 proteins in 171 species: Archae - 3; Bacteria - 6; Metazoa - 247; Fungi - 146; Plants - 73; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Protein Annotations
BioGrid:28732EMBL:AC012654EMBL:AF479279EMBL:AY046014EMBL:AY133819EMBL:CP002684EnsemblPlants:AT1G71820
EnsemblPlants:AT1G71820.1entrez:843512ExpressionAtlas:Q94AI6GeneID:843512Genevisible:Q94AI6GO:GO:0000145GO:GO:0005576
GO:GO:0005618GO:GO:0005829GO:GO:0005856GO:GO:0005886GO:GO:0006887GO:GO:0009524hmmpanther:PTHR21292
hmmpanther:PTHR21292:SF1HOGENOM:HOG000239489IntAct:Q94AI6InterPro:IPR010326iPTMnet:Q94AI6ncoils:CoilPANTHER:PTHR21292
Pfam:PF06046Pfam:Q94AI6PhylomeDB:Q94AI6PIR:G96740PRIDE:Q94AI6PRO:PR:Q94AI6ProteinModelPortal:Q94AI6
Proteomes:UP000006548RefSeq:NP_565026.1TAIR:AT1G71820tair10-symbols:SEC6UniGene:At.21950UniProt:Q94AI6
Coordinates (TAIR10) chr1:+:27010022..27016745
Molecular Weight (calculated) 85678.50 Da
IEP (calculated) 4.51
GRAVY (calculated) -0.32
Length 752 amino acids
Sequence (TAIR10)
(BLAST)
001: MMVEDLGVEA KEAAVREVAK LLPLPELLQS ISSIKADYIA RQQANDAQLS TMVAEQVEQA QAGLESLSSS EKTIYELRDN FISIDKLCQE CQTLIDNHDQ
101: IKLLSNARNN LNKTLKDVEG MMSISVEAAA ARDSLSDDKE IVNTYERLTA LDGKRRFALA AAGEEVGRLR EYFEDVDRTW ETFEKTLWGH VSNYYKLSKE
201: SPQTLVRALR VVEMQEILDQ QLAEEAAEAE GEGAMASVAN PRRPGKKSTT TSASSKGLAQ QKLKVQGKGY KDKCYEQIRK AVEDRFNRLL TLVFEDLKAA
301: LEEARMIGEE LGDIYDYVAP CFPPRYEIFQ LMVNLYTERF IQMLRLLSDR ANDLTNIEIL KVTGWVVEYQ ENLIALGVDD SLAQVCSESG SMDPLMNAYV
401: ERMQATTKKW YMNILEADKV QPPKKTEEGK LYTPAAVDLF RILGEQVQIV RDNSTDVMLY RIALAIIQVM IDFQAAEKKR VDEPASDIGL EPLCAMINNN
501: LRCYDLAMEL SNSTLEALPQ NYAEQVNFED TCKGFLEVAK EAVHQTVRVI FEDPGVQELL VKLYQKEWCE GQVTEYLVAT FGDYFTDVKM YVEERSFRRF
601: VEACLEETVV VYVDHLLTQK NYIKEETIER MRLDEEVLMD FFREYISASK VESRIRIMSD LRELASAESL DAFTLVYSNI LEHQPDCPAE VVEKLVSLRE
701: GIPRKDTKEV VQECKEIYEN TLVDGNPPKT GFVFPRVKCL TASKGSMWRK LT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)