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AT1G71800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cleavage stimulating factor 64
Curator
Summary (TAIR10)
RNA 3′-end–processing factor of antisense FLC transcript. Mediates silencing of the floral repressor gene FLC.
Computational
Description (TAIR10)
cleavage stimulating factor 64 (CSTF64); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G00830.3); Has 21430 Blast hits to 18533 proteins in 865 species: Archae - 10; Bacteria - 1688; Metazoa - 9678; Fungi - 3064; Plants - 4656; Viruses - 0; Other Eukaryotes - 2334 (source: NCBI BLink).
Protein Annotations
BioGrid:28730eggNOG:ENOG410XQBVeggNOG:KOG0108EMBL:AC012654
EMBL:AF515695EMBL:AK229116EMBL:CP002684EnsemblPlants:AT1G71800
EnsemblPlants:AT1G71800.1entrez:843510Gene3D:3.30.70.330GeneID:843510
Genevisible:Q9M9G6GO:GO:0000166GO:GO:0003729GO:GO:0005847
GO:GO:0031047GO:GO:0031123GO:GO:0042868GO:GO:0045892
GO:GO:0048589GO:GO:0060968GO:GO:0098789Gramene:AT1G71800.1
hmmpanther:PTHR23139hmmpanther:PTHR23139:SF8HOGENOM:HOG000214372InParanoid:Q9M9G6
IntAct:Q9M9G6InterPro:IPR000504InterPro:IPR012677InterPro:IPR025742
InterPro:IPR026896KEGG:ath:AT1G71800KO:K14407OMA:INEGPPH
PaxDb:Q9M9G6Pfam:PF00076Pfam:PF14304Pfam:PF14327
Pfam:Q9M9G6Pfscan:PS50102PhylomeDB:Q9M9G6PIR:E96740
PRIDE:Q9M9G6PRO:PR:Q9M9G6PROSITE:PS50102ProteinModelPortal:Q9M9G6
Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-77595RefSeq:NP_177325.2
SMART:SM00360SMR:Q9M9G6STRING:3702.AT1G71800.1SUPFAM:SSF54928
TAIR:AT1G71800tair10-symbols:CSTF64UniGene:At.12026UniGene:At.22646
UniProt:Q9M9G6
Coordinates (TAIR10) chr1:+:26999606..27001850
Molecular Weight (calculated) 50139.70 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.55
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSSQRRC VFVGNIPYDA TEEQLREICG EVGPVVSFRL VTDRETGKPK GYGFCEYKDE ETALSARRNL QSYEINGRQL RVDFAENDKG TDKTRDQSQG
101: GPGLPSTTTV TESQKQIGGP VDSNMHQPVG LHLATTAASV IAGALGGPQV GSQFTQSNLQ VPASDPLALH LAKMSRSQLT EIISSIKLMA TQNKEHARQL
201: LVSRPQLLKA VFLAQVMLGI VSPQVLQSPN IVQAPSHMTG SSIQDAQLSG QNLLPPLAQR SQQLSRAPHS QYPVQQSSKQ PFSQIPQLVA QPGPSSVNPP
301: PRSQVKVENA PFQRQQVVPA STNIGYSSQN SVPNNAIQPS QVPHQALPNS VMQQGGQTVS LNFGKRINEG PPHQSMNRPS KMMKVEDRRT TSLPGGHVSN
401: SMLPNQAQAP QTHISPDVQS TLLQQVMNLT PEQLRLLTPE QQQEVLKLQQ ALKQDHMMQP S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)