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AT1G71740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2TUeggNOG:ENOG410Z619EMBL:AC012654EMBL:AY954772
EMBL:CP002684EnsemblPlants:AT1G71740EnsemblPlants:AT1G71740.1entrez:843504
GeneID:843504Gramene:AT1G71740.1hmmpanther:PTHR33237hmmpanther:PTHR33237:SF4
HOGENOM:HOG000090639KEGG:ath:AT1G71740OMA:FMCASHSPhylomeDB:Q9M9H2
PIR:G96739Proteomes:UP000006548RefSeq:NP_177319.1STRING:3702.AT1G71740.1
TAIR:AT1G71740UniGene:At.52481UniProt:Q9M9H2
Coordinates (TAIR10) chr1:+:26987245..26987637
Molecular Weight (calculated) 14505.70 Da
IEP (calculated) 10.05
GRAVY (calculated) -0.33
Length 130 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQTVPPSRT KPLTIFKMGL ASASVRLVNL ASHSKRKLRR WAACYGSRDY EPVIYLQNDM TMMNNGGVYE YNGDPSMLLS GDQRRGPLWQ KNILMGGKCQ
101: LPDFSGVILY DADGQVVPPA KNSLPLLTWK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)