AT1G71720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleic acid-binding proteins superfamily | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleic acid-binding proteins superfamily; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: ribosomal protein S1 (TAIR:AT5G30510.1); Has 12228 Blast hits to 10737 proteins in 2456 species: Archae - 10; Bacteria - 9648; Metazoa - 36; Fungi - 16; Plants - 190; Viruses - 0; Other Eukaryotes - 2328 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:26983744..26985893 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56329.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.77 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 500 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQTLLCQPCK SLPILTASSS SSLIRSSGDV RECIDFRASE KVSKFQFHVT LSPFAFRGFS ICREFAVRGA YGIRFCSRED VSGVGNGGIV AEEEIELLNK 101: PNPLPKSENE ESGKADDDAI LEPFLKFFKP EEEGEGIESE VSDETDRVSV EYYDPKPGDF VVGVVVSGNE NKLDVNIGAD MLGTMLTKEI LPLYDKELDY 201: LLCDLKYDAE EFLVNGKMGI VKDDDEGVEI AEFARQGRPV VEIGTVVFAE VLGRTLSGRP LLSSRRYFRR IAWHRVRQIK QLNEPIEVKI TEWNTGGLLT 301: RIEGLRAFIP KQELVKKVNT FTELKENVGR RFLVQITRLN EDKNDLILSE KVAWEKLYLR EGTLLEGTVV KILPYGAQVK LGDSSRSGLL HISNITRRRI 401: GSVSDVLQVD ESVKVLVVKS LFPDKISLSI ADLESEPGLF ISDREKVFTE AEEMAKKYRE KMPLVATSPI SDRPPITSSF PQGKDEEIYA NWEWFKFESQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)