AT1G71690.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.594 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF579) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF579); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT4G09990.1); Has 254 Blast hits to 253 proteins in 21 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:26947806..26949064 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33476.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.05 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||
| Length | 295 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTYLPFPMT TRLILSSFVS LVVLTLFFIT RTGFSPSSSF HQPLNNTLRI STSSTGSKLQ SPRSCNKIPP SLADALVHYA SSNVTPQQTL SEISVTKKEL 101: EKKSPCNFLV FGLGHDSLMW ATLNHGGRTI FLDEDESWIH QIAEKFPSLE SYHVRYKTKV RDAEALMAAT KDREECRRVS TDLRVSTCEL ALKGLPEVVY 201: ETEWDLIMVD APTGFHEEAP GRMSAIYTAG MIARRRKDEE ETTAVFVHDV DRKVEDEFSM EFLCRDYMTK QEGRLRHFTV PSHRNYGVSG VKFCP |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)