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AT1G71690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.594
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF579)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF579); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT4G09990.1); Has 254 Blast hits to 253 proteins in 21 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT9VeggNOG:ENOG4110820EMBL:AC016163EMBL:AK228612EMBL:BT012133EMBL:BT012405EMBL:CP002684
EnsemblPlants:AT1G71690EnsemblPlants:AT1G71690.1entrez:843495GeneID:843495GO:GO:0016021GO:GO:0045492Gramene:AT1G71690.1
hmmpanther:PTHR31444hmmpanther:PTHR31444:SF2HOGENOM:HOG000238795InterPro:IPR006514InterPro:IPR021148KEGG:ath:AT1G71690KO:K18801
OMA:TTAVFVHPfam:PF04669PhylomeDB:Q9C9J1Proteomes:UP000006548RefSeq:NP_565020.1TAIR:AT1G71690TIGRfam:TIGR01627
TIGRFAMs:TIGR01627TMHMM:TMhelixUniGene:At.70348UniProt:Q9C9J1
Coordinates (TAIR10) chr1:+:26947806..26949064
Molecular Weight (calculated) 33476.00 Da
IEP (calculated) 7.05
GRAVY (calculated) -0.32
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTYLPFPMT TRLILSSFVS LVVLTLFFIT RTGFSPSSSF HQPLNNTLRI STSSTGSKLQ SPRSCNKIPP SLADALVHYA SSNVTPQQTL SEISVTKKEL
101: EKKSPCNFLV FGLGHDSLMW ATLNHGGRTI FLDEDESWIH QIAEKFPSLE SYHVRYKTKV RDAEALMAAT KDREECRRVS TDLRVSTCEL ALKGLPEVVY
201: ETEWDLIMVD APTGFHEEAP GRMSAIYTAG MIARRRKDEE ETTAVFVHDV DRKVEDEFSM EFLCRDYMTK QEGRLRHFTV PSHRNYGVSG VKFCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)