suba logo
AT1G71500.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25511433 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rieske (2Fe-2S) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rieske (2Fe-2S) domain-containing protein; FUNCTIONS IN: oxidoreductase activity, 2 iron, 2 sulfur cluster binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941); Has 295 Blast hits to 295 proteins in 102 species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2146eggNOG:ENOG410IF1DEMBL:AC016163EMBL:AK119109EMBL:AY087227EMBL:AY093031EMBL:AY128934
EMBL:CP002684EnsemblPlants:AT1G71500EnsemblPlants:AT1G71500.1entrez:843491Gene3D:2.102.10.10GeneID:843491GO:GO:0008942
GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009941GO:GO:0042128GO:GO:0051537Gramene:AT1G71500.1
hmmpanther:PTHR21496hmmpanther:PTHR21496:SF0HOGENOM:HOG000243736InterPro:IPR012748InterPro:IPR017941InterPro:IPR023329KEGG:ath:AT1G71500
OMA:GAIKEWYPfam:PF13806Pfscan:PS51296PhylomeDB:Q9C9I7PROSITE:PS51296Proteomes:UP000006548RefSeq:NP_565018.1
STRING:3702.AT1G71500.1SUPFAM:0043399SUPFAM:SSF103511SUPFAM:SSF50022TAIR:AT1G71500UniGene:At.17909UniProt:Q9C9I7
Coordinates (TAIR10) chr1:+:26936084..26937331
Molecular Weight (calculated) 31728.90 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.23
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTASSSLP RNYSFTTPRP SSFIRGPPLA RTLPLYLRRN RRVALTYRLD QNSKQRSGGN VRCEATEVSS SSSVSTPGRN WVPVVPLSAL PKGERRVVIQ
101: DDETILLLWY KNDVFAIENR SPAEGAYSEG LLNARLTQDG CIVCPSTDST FDLRTGEIRE WYPKNPVLRV LTPALRKLFV YPVKYDEENI YISIRDSGKT
201: EAAAEIVFSG KAQPGLTATN VNVDEVRMIV DEGSEGFGFT KKNEVINGKA AVIGFLLLLD FELLTGKGLL KGTGFLDFLY SASDAFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)