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AT1G71480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nuclear transport factor 2 (NTF2) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: transport, protein import into nucleus; LOCATED IN: chloroplast thylakoid membrane, intracellular, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein (TAIR:AT5G41470.1); Has 98 Blast hits to 98 proteins in 29 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXTQeggNOG:ENOG4111ZTBEMBL:AC016163EMBL:AK175810
EMBL:AK175869EMBL:AK176645EMBL:AK176822EMBL:AK176871
EMBL:AK316764EMBL:BT010641EMBL:CP002684EnsemblPlants:AT1G71480
EnsemblPlants:AT1G71480.1entrez:843489Gene3D:3.10.450.50GeneID:843489
GO:GO:0006810GO:GO:0009507GO:GO:0009535Gramene:AT1G71480.1
hmmpanther:PTHR33698hmmpanther:PTHR33698:SF3HOGENOM:HOG000243032IntAct:Q9C9I5
InterPro:IPR002075InterPro:IPR032710KEGG:ath:AT1G71480OMA:REFYDGV
Pfam:PF02136PhylomeDB:Q9C9I5Proteomes:UP000006548RefSeq:NP_177304.1
STRING:3702.AT1G71480.1SUPFAM:SSF54427TAIR:AT1G71480UniGene:At.43507
UniGene:At.75242UniProt:Q9C9I5
Coordinates (TAIR10) chr1:+:26932079..26933086
Molecular Weight (calculated) 23520.90 Da
IEP (calculated) 5.24
GRAVY (calculated) 0.10
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFTASLVSY LTSPSLVSLN HLPPSFFLPT KLVKPTSLTH SQPPRLSASY GPAAKAATAN DVVPETAPTS ASEVVSSFYA AVNVHDLSSV TDLIAQDCVY
101: EDLVFSSPFV GRKAILDFFG KFIESTSTDL QFVIDDISTE DSSAVGVSWH LEWKGKNFPF SKGCSFYRLE VIDGKRQIVY GRDCVEPAIK PGETVLAAIK
201: GVTWLLQKFP QLADQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)