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AT1G71440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.960
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tubulin folding cofactor E / Pfifferling (PFI)
Curator
Summary (TAIR10)
Encodes tubulin-folding cofactor E. Mutant embryos consist of one or a few grossly enlarged cells, surrounded by an endosperm that fails to cellularize and contains a few big nuclei.
Computational
Description (TAIR10)
PFIFFERLING (PFI); INVOLVED IN: tubulin complex assembly, embryo development ending in seed dormancy, cytokinesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytoskeleton-associated protein, CAP-Gly (InterPro:IPR000938); Has 7270 Blast hits to 6366 proteins in 489 species: Archae - 4; Bacteria - 1949; Metazoa - 3435; Fungi - 492; Plants - 819; Viruses - 0; Other Eukaryotes - 571 (source: NCBI BLink).
Protein Annotations
DNASU:843485eggNOG:ENOG41103AEeggNOG:KOG2982EMBL:AC016163
EMBL:AF486853EMBL:AK118835EMBL:AY085930EMBL:BT002403
EMBL:BT008888EMBL:CP002684EnsemblPlants:AT1G71440EnsemblPlants:AT1G71440.1
entrez:843485Gene3D:2.30.30.190Gene3D:3.80.10.10GeneID:843485
Genevisible:Q8GRL7GO:GO:0009507GO:GO:0009793Gramene:AT1G71440.1
hmmpanther:PTHR15140hmmpanther:PTHR15140:SF6HOGENOM:HOG000241155InParanoid:Q8GRL7
InterPro:IPR000938InterPro:IPR001611InterPro:IPR003591InterPro:IPR029071
InterPro:IPR032675KEGG:ath:AT1G71440OMA:VSLRNCAPaxDb:Q8GRL7
Pfam:PF01302Pfam:Q8GRL7Pfscan:PS50245Pfscan:PS51450
PhylomeDB:Q8GRL7PRIDE:Q8GRL7PRO:PR:Q8GRL7PROSITE:PS00845
PROSITE:PS50245PROSITE:PS51450ProteinModelPortal:Q8GRL7Proteomes:UP000006548
RefSeq:NP_565017.1scanprosite:PS00845SMART:SM00369SMART:SM01052
SMR:Q8GRL7STRING:3702.AT1G71440.1SUPFAM:SSF52058SUPFAM:SSF54236
SUPFAM:SSF74924TAIR:AT1G71440tair10-symbols:PFItair10-symbols:TFC E
UniGene:At.35185UniGene:At.48359UniProt:Q8GRL7
Coordinates (TAIR10) chr1:-:26921271..26924373
Molecular Weight (calculated) 58245.50 Da
IEP (calculated) 5.10
GRAVY (calculated) -0.22
Length 531 amino acids
Sequence (TAIR10)
(BLAST)
001: MKAESSNESF IIGQRVHSLN DSRRVGTVKY VGDVEGYSGT WIGVDWDQDG DGKHNGSVNG VFYFNGRSQS SASFVRSQNL SRGITLLQAL ELRYRTISTK
101: DEEDEMYVLS AGNRRVSIQL LGGDKIQDKL SRFEELTSAS LSYLGVSSLG VSSDLGSILP NLKLLDLTGN LISDWEEIGA LCEQLPALTT LNLSCNSLSS
201: DIKSLPQLKN IRVLVLNNSG LSWTQVEILR RSLPGIEELH LMGNMISTIT STSSSDDQAF NSLRLLNLDD NCISDWSEVL KLSQLPCLEQ LYLNKNKLSR
301: IFQSVNGTES SEKGSDPFPS LSCLLLGANN IGDLASVDAL NGFPQLVDIR LSENPISDPV RGGVPRFVLV ARLTKVQVLN GSEVRAREKK DSEIRYVRMV
401: MSKLNDKSGE IELLHPRFYE LKKLHGIEDE RASAENSGPK NIASGLISIT LKCVGPSMGE KPHLTKKLPG SITVGKLKIL SENFFKLKSI KPRLFLQEEG
501: SPFPTALDDE TATLLDVGIC DGSTLLVDEE S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)