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AT1G71350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : eukaryotic translation initiation factor SUI1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
eukaryotic translation initiation factor SUI1 family protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Translation initiation factor SUI1 (InterPro:IPR001950), SWIB/MDM2 domain (InterPro:IPR003121), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (TAIR:AT1G09150.1); Has 1013 Blast hits to 993 proteins in 255 species: Archae - 62; Bacteria - 0; Metazoa - 354; Fungi - 333; Plants - 100; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSAVeggNOG:KOG2522EMBL:AK227085EMBL:CP002684EnsemblPlants:AT1G71350EnsemblPlants:AT1G71350.1entrez:843476
Gene3D:1.10.245.10Gene3D:2.30.130.10Gene3D:3.30.780.10GeneID:843476GO:GO:0003743Gramene:AT1G71350.1hmmpanther:PTHR12217
hmmpanther:PTHR12217:SF4HOGENOM:HOG000043078InterPro:IPR001950InterPro:IPR002478InterPro:IPR003121InterPro:IPR015947KEGG:ath:AT1G71350
KO:K15027OMA:TVMKLPWPfam:PF01253Pfscan:PS50296Pfscan:PS50890PhylomeDB:Q0WUR1PROSITE:PS50296
PROSITE:PS50890Proteomes:UP000006548RefSeq:NP_177291.2SMR:Q0WUR1STRING:3702.AT1G71350.1SUPFAM:SSF47592SUPFAM:SSF55159
SUPFAM:SSF88697TAIR:AT1G71350UniGene:At.70350UniProt:Q0WUR1
Coordinates (TAIR10) chr1:-:26888525..26891209
Molecular Weight (calculated) 65677.90 Da
IEP (calculated) 7.16
GRAVY (calculated) -0.33
Length 597 amino acids
Sequence (TAIR10)
(BLAST)
001: MFKKAVEAKS HQRLSGADRK KLRRTVRNRL PLLTDELLDA ILPPKVEITL SKFQNRVIVY SIEGGCPMFF DIDGRGTEIF PTVFALWEAP EMLPSFMLKG
101: GEVSRYIIGG ADLMFPGILI PPQGYPSFSA GEIWAVKVPG NLAPIAVGCT TMSSEEARKA GLRGKALRIT HYYRDFLWES AEGHYVPNAG FMEDVVMEDP
201: SYLAPGSGED ILDTSASTGN EEDESALETA STSAADAKND AEVHVVGSMN ELYLVDDVCA TETNTDKQIT LSPEEVDTLL DQCLLQALHT TLKEKDLPIP
301: GSTLWANHVL PCRPSGLTLD IKKSSHKKLS KWLQSKASGG MISVKEDKHK KEIVLISVNR SHPDYKSFKP EKKKAEVSES PGERSTAQAQ SEKGLEIIEV
401: YKSSIHNSAI FASVGEDKGN LYTASEATDV VFKYIEKENL VKPTNKSMVV LDPILCDALF KGAIKKGSAY PSEIHKKDVG STFVGRMQPN HVVMRGGGEP
501: VVRKGAVKPV QIMTERRQGN KKVTKVTGME TFLIDPDSFG SELQKKFACS TSVGELPGKK GYEVLIQGGV IDNLARYMVE HYGVPKRYIE VLDKTRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)