AT1G71350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : eukaryotic translation initiation factor SUI1 family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
eukaryotic translation initiation factor SUI1 family protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Translation initiation factor SUI1 (InterPro:IPR001950), SWIB/MDM2 domain (InterPro:IPR003121), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (TAIR:AT1G09150.1); Has 1013 Blast hits to 993 proteins in 255 species: Archae - 62; Bacteria - 0; Metazoa - 354; Fungi - 333; Plants - 100; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:26888525..26891209 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65677.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.16 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||
| Length | 597 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFKKAVEAKS HQRLSGADRK KLRRTVRNRL PLLTDELLDA ILPPKVEITL SKFQNRVIVY SIEGGCPMFF DIDGRGTEIF PTVFALWEAP EMLPSFMLKG 101: GEVSRYIIGG ADLMFPGILI PPQGYPSFSA GEIWAVKVPG NLAPIAVGCT TMSSEEARKA GLRGKALRIT HYYRDFLWES AEGHYVPNAG FMEDVVMEDP 201: SYLAPGSGED ILDTSASTGN EEDESALETA STSAADAKND AEVHVVGSMN ELYLVDDVCA TETNTDKQIT LSPEEVDTLL DQCLLQALHT TLKEKDLPIP 301: GSTLWANHVL PCRPSGLTLD IKKSSHKKLS KWLQSKASGG MISVKEDKHK KEIVLISVNR SHPDYKSFKP EKKKAEVSES PGERSTAQAQ SEKGLEIIEV 401: YKSSIHNSAI FASVGEDKGN LYTASEATDV VFKYIEKENL VKPTNKSMVV LDPILCDALF KGAIKKGSAY PSEIHKKDVG STFVGRMQPN HVVMRGGGEP 501: VVRKGAVKPV QIMTERRQGN KKVTKVTGME TFLIDPDSFG SELQKKFACS TSVGELPGKK GYEVLIQGGV IDNLARYMVE HYGVPKRYIE VLDKTRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)