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AT1G71340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.758
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLC-like phosphodiesterases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); Has 6308 Blast hits to 6301 proteins in 1557 species: Archae - 95; Bacteria - 5357; Metazoa - 60; Fungi - 20; Plants - 36; Viruses - 13; Other Eukaryotes - 727 (source: NCBI BLink).
Protein Annotations
EC:3.1.4.46eggNOG:COG0584eggNOG:KOG2258EMBL:AC016162
EMBL:CP002684EnsemblPlants:AT1G71340EnsemblPlants:AT1G71340.1entrez:843475
Gene3D:3.20.20.190GeneID:843475Genevisible:F4I8H8GO:GO:0006071
GO:GO:0006629GO:GO:0008889GO:GO:0016021Gramene:AT1G71340.1
hmmpanther:PTHR23344hmmpanther:PTHR23344:SF28InParanoid:F4I8H8InterPro:IPR004129
InterPro:IPR017946InterPro:IPR030395KEGG:ath:AT1G71340OMA:TRTECME
PANTHER:PTHR23344PaxDb:F4I8H8Pfam:F4I8H8Pfam:PF03009
Pfscan:PS51704PIR:C96738PRIDE:F4I8H8PRO:PR:F4I8H8
PROSITE:PS51704ProteinModelPortal:F4I8H8Proteomes:UP000006548RefSeq:NP_177290.3
SMR:F4I8H8STRING:3702.AT1G71340.1SUPFAM:SSF51695TAIR:AT1G71340
TMHMM:TMhelixUniGene:At.22241UniProt:F4I8H8
Coordinates (TAIR10) chr1:-:26885556..26887321
Molecular Weight (calculated) 37376.60 Da
IEP (calculated) 9.77
GRAVY (calculated) -0.11
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIFEWRHRR RPFDGGGTRR RRFFSPLYSR NFKRTILFAV IFLAIFPPLY FHFKLRRIRQ IVAQKCDWLH HPPLVCAHGG DSTLAFPNTM DAYSFAIRSR
101: VDCIEVDVSR SSDGVLFALH NRDLQRIARN SSVQVGDLSM KQIKELDVSE IVKGTLGSSR IPTLEEALAL ISNSVRKVIL DAKVGPPMYE KGLAQDILSI
201: IERAQCNNCI VWAKSDTLAR DIIRRAPDTM VGYIVMVDPL TGARNSLLRM KGARVVGVYH PLIDEELVRV VRRRNKEVYA WTVDDADPMK RMLHLGVDAV
301: VTSDPSMFQG LMEDLRTECL EEGFSIRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)