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AT1G71250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G08460.1); Has 3499 Blast hits to 3462 proteins in 237 species: Archae - 0; Bacteria - 354; Metazoa - 0; Fungi - 36; Plants - 3096; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G71250-MONOMEREC:3.1.1.-eggNOG:ENOG410IJSGeggNOG:ENOG4110AT7EMBL:AC016162EMBL:AK117368EMBL:BT005325
EMBL:CP002684EnsemblPlants:AT1G71250EnsemblPlants:AT1G71250.1entrez:843466Gene3D:3.40.50.1110GeneID:843466Genevisible:Q9FVV1
GO:GO:0005576GO:GO:0016042GO:GO:0016298Gramene:AT1G71250.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF168HOGENOM:HOG000237649
InParanoid:Q9FVV1InterPro:IPR001087InterPro:IPR008265InterPro:IPR013830KEGG:ath:AT1G71250OMA:PPDRCVDPaxDb:Q9FVV1
Pfam:PF00657Pfam:Q9FVV1PhylomeDB:Q9FVV1PIR:B96737PRIDE:Q9FVV1PRO:PR:Q9FVV1PROSITE:PS01098
ProteinModelPortal:Q9FVV1Proteomes:UP000006548RefSeq:NP_177281.1scanprosite:PS01098STRING:3702.AT1G71250.1SUPFAM:SSF52266TAIR:AT1G71250
TMHMM:TMhelixUniGene:At.28009UniGene:At.35209UniProt:Q9FVV1
Coordinates (TAIR10) chr1:+:26860125..26861582
Molecular Weight (calculated) 41194.70 Da
IEP (calculated) 9.04
GRAVY (calculated) -0.02
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTNRKKMKV HIGGYVLILA LTVSVILQQP ELVTGQARVP AMFVLGDSLV DAGNNNFLQT VARANFLPYG IDMNYQPTGR FSNGLTFIDL LARLLEIPSP
101: PPFADPTTSG NRILQGVNYA SAAAGILDVS GYNYGGRFSL NQQMVNLETT LSQLRTMMSP QNFTDYLARS LVVLVFGSND YINNYLMPNL YDSSIRFRPP
201: DFANLLLSQY ARQLLTLYSL GLRKIFIPGV APLGCIPNQR ARGISPPDRC VDSVNQILGT FNQGLKSLVD QLNQRSPGAI YVYGNTYSAI GDILNNPAAY
301: GFSVVDRACC GIGRNQGQIT CLPLQTPCPN RNQYVFWDAF HPTQTANSIL ARRAFYGPPS DAYPVNVQQM TLLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)