suba logo
AT1G71240.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF639)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF639) (TAIR:AT1G48840.1); Has 140 Blast hits to 137 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIDUeggNOG:ENOG4111F6NEMBL:CP002684EnsemblPlants:AT1G71240EnsemblPlants:AT1G71240.1entrez:843465ExpressionAtlas:A8MR99
GeneID:843465GO:GO:0016021Gramene:AT1G71240.1hmmpanther:PTHR31860hmmpanther:PTHR31860:SF3HOGENOM:HOG000006142InParanoid:A8MR99
InterPro:IPR006927OMA:STAHYLFPaxDb:A8MR99Pfam:PF04842PhylomeDB:A8MR99PRIDE:A8MR99ProteinModelPortal:A8MR99
Proteomes:UP000006548RefSeq:NP_177280.2STRING:3702.AT1G71240.1TAIR:AT1G71240TMHMM:TMhelixUniGene:At.35211UniProt:A8MR99
Coordinates (TAIR10) chr1:+:26855489..26859599
Molecular Weight (calculated) 92880.70 Da
IEP (calculated) 9.88
GRAVY (calculated) -0.13
Length 824 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQRVGALKR LKLSSATPDF PIGFRCDGVR VHRRCSFSRN CASNRKPRLR IVAQKKWKLN DIDTNVVQER FSQWVSKSQK ILSDVTSPLK KKSQSLKKID
101: LEDQQDFEDL EELLTVEQTV RSDTPKGFLS FDAIISIEQF SSRMNGITGK KMQDIFETIV SPALSTDARY LVEYCCFRFL SRDSSEFHPC LKEPAFQRLI
201: FITMLAWANP YCKERNARND ASGKPSFQGR FIGEEAFIRI APAISGLADR ATVHNLFKAL ATATDQKGIS LEIWLAYIQE LVKIHEGRKS HQTTDFPQLS
301: SERLLCMAAN RKGPVLKWEN NVAWPGKLTL TDKALYFEPV DIKGSKGVLR LDLAGDKSTV EKAKVGPLGF SLFDSAVSVS SGPGLATWVL EFVDLGGELR
401: RDVWHAIISE VIALHTFLRE FGPGEGDKSL YQVFGAKKGK EKAIASASNC IARLQALQYM RNLPDDPIKL VQFSFLQQVA YGDIVCQTLA VNFWGGPLLT
501: KVSDKRGDIA RASRESYETF DNVSDLDGSV YLKRWMRSPS WGSTASMNFW KNSSLRQGLV LSKHLAVADL TLVERATETC RQKYKVVEKT QATIDAATIK
601: GIPSNIDLFK ELILPLSITA TEFEKLRCWE EPYMTVSFLA FASTIIFRNL LQYVLPVSLI FLATGMLTLK GLRRQGRLGR LFGIISIRDQ PSSNTIQKII
701: AVKDAMQNLE SYLQKVNVVL LKLRTIVLSG HPQITTEVAL AMLSIATVLV IVPFKYVLAF VLYDQFTREL EFRKEMVKKF NAFLRERWEM VPAAPVIVLP
801: FVNEESTPAT QENKQLRKPT PRGD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)