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AT1G71230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.945
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : COP9-signalosome 5B
Curator
Summary (TAIR10)
Encodes a subunit of the COP9 complex, similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Involved in protein deneddylation. Double mutants with CSN5A are constitutively photomorphogenic (de-etiolated) and have abnormal auxin responses.
Computational
Description (TAIR10)
COP9-signalosome 5B (CSN5B); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome 5A (TAIR:AT1G22920.1); Has 1278 Blast hits to 1275 proteins in 253 species: Archae - 0; Bacteria - 6; Metazoa - 459; Fungi - 394; Plants - 243; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Protein Annotations
BioGrid:28683EC:3.4.-.-eggNOG:COG1310eggNOG:KOG1554EMBL:AC016162EMBL:AF087412EMBL:AF395061
EMBL:AF411778EMBL:AY124816EMBL:CP002684EnsemblPlants:AT1G71230EnsemblPlants:AT1G71230.1entrez:843463GeneID:843463
Genevisible:Q9FVU9GO:GO:0000338GO:GO:0005737GO:GO:0007275GO:GO:0008180GO:GO:0008237GO:GO:0009585
GO:GO:0009733GO:GO:0010100GO:GO:0010387GO:GO:0010971GO:GO:0045732GO:GO:0046872GO:GO:2000082
Gramene:AT1G71230.1hmmpanther:PTHR10410hmmpanther:PTHR10410:SF6HOGENOM:HOG000116528InParanoid:Q9FVU9IntAct:Q9FVU9InterPro:IPR000555
KEGG:ath:AT1G71230KO:K09613MEROPS:M67.A02MINT:MINT-8068238OMA:WVAVVIDPaxDb:Q9FVU9Pfam:PF01398
Pfam:Q9FVU9PhylomeDB:Q9FVU9PIR:H96736PIR:T52042PRIDE:Q9FVU9PRO:PR:Q9FVU9ProteinModelPortal:Q9FVU9
Proteomes:UP000006548Reactome:R-ATH-5696394Reactome:R-ATH-6781823RefSeq:NP_177279.1SMART:SM00232SMR:Q9FVU9STRING:3702.AT1G71230.1
SUPFAM:0048572TAIR:AT1G71230tair10-symbols:AJH2tair10-symbols:CSN5tair10-symbols:CSN5BUniGene:At.17922UniProt:Q9FVU9
Coordinates (TAIR10) chr1:+:26852560..26854255
Molecular Weight (calculated) 40320.20 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.52
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGSSSTIAR KTWELENSIL TVDSPDSTSD NIFYYDDTSQ TRFQQEKPWE NDPHYFKRVK ISALALLKMV VHARSGGTIE IMGLMQGKTD GDTIIVMDAF
101: ALPVEGTETR VNAQDDAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQR LNQQHQEPFL AVVIDPTRTV SAGKVEIGAF RTYSKGYKPP
201: DEPVSEYQTI PLNKIEDFGV HCKQYYSLDV TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESHLVQSRFG GVVPSSLHKK
301: KEDESQLTKI TRDSAKITVE QVHGLMSQVI KDELFNSMRQ SNNKSPTDSS DPDPMITY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)