AT1G71210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 23089 Blast hits to 6463 proteins in 161 species: Archae - 1; Bacteria - 0; Metazoa - 25; Fungi - 48; Plants - 22668; Viruses - 0; Other Eukaryotes - 347 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:26838850..26841489 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100437.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.17 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 879 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRCWSVTVE RSCEGMLLRR RILSLSASSF RNFTSGNNGD AIPFSTFTKP SSSIAPGDFL VREWKDWFKH RDVKQSHQLI DRIFDILRAP SNDGDDRAFY 101: LHLSNLRLRL TEKFVLDVLS HTRYDILCCL KFFDWAARQP GFHHTRATFH AIFKILRGAK LVTLMIDFLD RSVGFESCRH SLRLCDALVV GYAVAGRTDI 201: ALQHFGNMRF RGLDLDSFGY HVLLNALVEE KCFDSFDVIF DQISVRGFVC AVTHSILVKK FCKQGKLDEA EDYLRALLPN DPAGCGSGLG ILVDALCSKR 301: KFQEATKLLD EIKLVGTVNM DRAYNIWIRA LIKAGFLNNP ADFLQKISPL EGCELEVFRY NSMVFQLLKE NNLDGVYDIL TEMMVRGVSP NKKTMNAALC 401: FFCKAGFVDE ALELYRSRSE IGFAPTAMSY NYLIHTLCAN ESVEQAYDVL KGAIDRGHFL GGKTFSTLTN ALCWKGKPDM ARELVIAAAE RDLLPKRIAG 501: CKIISALCDV GKVEDALMIN ELFNKSGVDT SFKMFTSLIY GSITLMRGDI AAKLIIRMQE KGYTPTRSLY RNVIQCVCEM ESGEKNFFTT LLKFQLSLWE 601: HKVQAYNLFI EGAGFAGKPK LARLVYDMMD RDGITPTVAS NILMLQSYLK NEKIADALHF FHDLREQGKT KKRLYQVMIV GLCKANKLDD AMHFLEEMKG 701: EGLQPSIECY EVNIQKLCNE EKYDEAVGLV NEFRKSGRRI TAFIGNVLLH NAMKSKGVYE AWTRMRNIED KIPEMKSLGE LIGLFSGRID MEVELKRLDE 801: VIEKCYPLDM YTYNMLLRMI VMNQAEDAYE MVERIARRGY VPNERTDMIL ERANRILEER NSRSNLGRNG WNSRQRQLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)