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AT1G71180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.900
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 6-phosphogluconate dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, pentose-phosphate shunt, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT1G71170.1); Has 16470 Blast hits to 16450 proteins in 2208 species: Archae - 156; Bacteria - 10495; Metazoa - 327; Fungi - 372; Plants - 276; Viruses - 0; Other Eukaryotes - 4844 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G71180-MONOMEREC:1.1.1.31eggNOG:COG2084eggNOG:KOG0409EMBL:AC016972EMBL:AY051005EMBL:AY113980
EMBL:CP002684EnsemblPlants:AT1G71180EnsemblPlants:AT1G71180.1entrez:843458Gene3D:1.10.1040.10Gene3D:3.40.50.720GeneID:843458
Genevisible:Q949M8GO:GO:0004616GO:GO:0005739GO:GO:0006574GO:GO:0008442GO:GO:0051287Gramene:AT1G71180.1
hmmpanther:PTHR22981hmmpanther:PTHR22981:SF54HOGENOM:HOG000219608InParanoid:Q949M8InterPro:IPR006115InterPro:IPR008927InterPro:IPR013328
InterPro:IPR015815InterPro:IPR016040InterPro:IPR029154KEGG:ath:AT1G71180OMA:ESRTIQQPaxDb:Q949M8Pfam:PF03446
Pfam:PF14833Pfam:Q949M8PhylomeDB:Q949M8PIR:E96736PIRSF:PIRSF000103PRIDE:Q949M8PRO:PR:Q949M8
ProteinModelPortal:Q949M8Proteomes:UP000006548RefSeq:NP_565014.1SMR:Q949M8STRING:3702.AT1G71180.1SUPFAM:SSF48179SUPFAM:SSF51735
TAIR:AT1G71180TMHMM:TMhelixUniGene:At.28761UniGene:At.48358UniPathway:UPA00362UniProt:Q949M8
Coordinates (TAIR10) chr1:+:26832335..26833291
Molecular Weight (calculated) 33380.30 Da
IEP (calculated) 6.79
GRAVY (calculated) 0.09
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: MFYQSSSSLT QILHSFCGNT EMETPYPKLI DPSKTRIGWI GIGIMGSAMV SHIIAAGYSV TVYARDLRKT KDLQTKGARI ANSPKELAEM SDVVFTIVGN
101: FNDVRSLLLG DDGVLSGLTP GGVTVDMTSS KPGLAREIHA EARRRNCWAV DAPVSGGDAG AREGTLGIFA GGDSEIVEWL SPVMKNIGTV TYMGEAGSGQ
201: SCKIGNQIAG ASNLVGLAEG IVFAEKAGLD TVKWLEAVKD GAAGSAVMRL FGEMIVKRDY RATGFAEYMV KDLGMAAEAA MPGAALSKQL FTGMVANGDG
301: KLGIQGVVSV IRRLNGIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)