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AT1G71170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 6-phosphogluconate dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, binding, phosphogluconate dehydrogenase (decarboxylating) activity, catalytic activity; INVOLVED IN: oxidation reduction, pentose-phosphate shunt, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT1G71180.1); Has 15315 Blast hits to 15291 proteins in 2047 species: Archae - 135; Bacteria - 9501; Metazoa - 307; Fungi - 346; Plants - 270; Viruses - 0; Other Eukaryotes - 4756 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G71170-MONOMEREC:1.1.1.31eggNOG:COG2084eggNOG:KOG0409EMBL:AC016972EMBL:AK229143EMBL:CP002684
EnsemblPlants:AT1G71170EnsemblPlants:AT1G71170.1entrez:843457Gene3D:1.10.1040.10Gene3D:3.40.50.720GeneID:843457Genevisible:Q9C991
GO:GO:0004616GO:GO:0005739GO:GO:0006574GO:GO:0008442GO:GO:0051287Gramene:AT1G71170.1hmmpanther:PTHR22981
hmmpanther:PTHR22981:SF54HOGENOM:HOG000219608InParanoid:Q9C991InterPro:IPR006115InterPro:IPR008927InterPro:IPR013328InterPro:IPR015815
InterPro:IPR016040InterPro:IPR029154KEGG:ath:AT1G71170OMA:KIGNQICPaxDb:Q9C991Pfam:PF03446Pfam:PF14833
Pfam:Q9C991PhylomeDB:Q9C991PIR:D96736PIRSF:PIRSF000103PRIDE:Q9C991PRO:PR:Q9C991ProteinModelPortal:Q9C991
Proteomes:UP000006548RefSeq:NP_565013.2SMR:Q9C991STRING:3702.AT1G71170.1SUPFAM:SSF48179SUPFAM:SSF51735TAIR:AT1G71170
TMHMM:TMhelixUniGene:At.12951UniGene:At.35220UniPathway:UPA00362UniProt:Q9C991
Coordinates (TAIR10) chr1:+:26830673..26831572
Molecular Weight (calculated) 31440.40 Da
IEP (calculated) 8.02
GRAVY (calculated) 0.08
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: METQYPKLIE PSKTRIGWIG IGIMGSAMVS HILAAGYSVT VYARDLRKTK DLQTKGGRTA NSPKELGEMS DVVFTIVGNS NDVRSLLLGD DGVLSGLKPG
101: GVTVDMTSSK PGLAREIYAE ARRRDCWAVD APVSGGDAGA REGKLTIFAG GDSEIVEWLA PVMKTMGIVR FMGGAGSGQS CKIGNQICVG SNMIGLAEGI
201: VFAEKAGLDP VKWLEAVKDG AAGSAVMRLF GEMMAVRDYK ATGFAEYMVK DLGMAAEAAM AMPGTALNKQ LFTVMVANGD GKLGFQGVVD VIRRLNGLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)