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AT1G71080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA polymerase II transcription elongation factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA polymerase II transcription elongation factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eaf, ELL-associated factor (InterPro:IPR019194); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription elongation factor (TAIR:AT5G38050.1); Has 12853 Blast hits to 3725 proteins in 482 species: Archae - 50; Bacteria - 7340; Metazoa - 2093; Fungi - 1002; Plants - 180; Viruses - 45; Other Eukaryotes - 2143 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111KQJeggNOG:KOG4795EMBL:AC016972EMBL:AY060562
EMBL:AY133577EMBL:CP002684EnsemblPlants:AT1G71080EnsemblPlants:AT1G71080.1
entrez:843448GeneID:843448GO:GO:0003746GO:GO:0006355
GO:GO:0032783Gramene:AT1G71080.1hmmpanther:PTHR15970hmmpanther:PTHR15970:SF2
HOGENOM:HOG000237904InterPro:IPR019194InterPro:IPR027093KEGG:ath:AT1G71080
KO:K15186ncoils:CoilOMA:HKKKDNRPANTHER:PTHR15970
Pfam:PF09816PhylomeDB:Q9C9A0PIR:C96735Proteomes:UP000006548
RefSeq:NP_565010.1TAIR:AT1G71080UniGene:At.17824UniProt:Q9C9A0
Coordinates (TAIR10) chr1:-:26809987..26811645
Molecular Weight (calculated) 34832.90 Da
IEP (calculated) 4.42
GRAVY (calculated) -0.98
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNHSRDEPS TAPKTDQWYD LVLGSSAKDD SSHKFCTLRY EFKPASIDKN RSGSMHKKKD NRVSVEFQNN QPGKPKVTFE GSSEDYKESD AVLFFDGEKF
101: RLERLHRAVT QLRHVRTPGE SAAASQSAVP VEHRLSPVGR AAKSPQVNRS LLPDVPVEVE RIEIGKPENS AEPANTGNVP ATSPVEDKND DGDEHQEIDL
201: VEIFGSFTPE NDNAEKENAD GGEYVESLNK QLSMTEEEIA DVDDDSGGEG EKGLNAAEAL RAQVNAEVQK SQTSSSSSSS GSSSGSDSDG RSKSVSSGSG
301: SGGQSSSGSS SRGSGGSDDE DEVNSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)