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AT1G71030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MYB-like 2
Curator
Summary (TAIR10)
Encodes a putative myb family transcription factor. In contrast to most other myb-like proteins its myb domain consists of a single repeat. A proline-rich region potentially involved in transactivation is found in the C-terminal part of the protein. Its transcript accumulates mainly in leaves.
Computational
Description (TAIR10)
MYB-like 2 (MYBL2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3 (TAIR:AT1G22640.1); Has 6938 Blast hits to 6802 proteins in 388 species: Archae - 0; Bacteria - 0; Metazoa - 361; Fungi - 142; Plants - 5491; Viruses - 3; Other Eukaryotes - 941 (source: NCBI BLink).
Protein Annotations
DIP:DIP-38467NeggNOG:COG5147eggNOG:KOG0048EMBL:AC016972EMBL:AF370609EMBL:AY048231EMBL:AY087093
EMBL:AY091697EMBL:AY519519EMBL:CP002684EnsemblPlants:AT1G71030EnsemblPlants:AT1G71030.1entrez:843443Gene3D:1.10.10.60
GeneID:843443GO:GO:0003677GO:GO:0003700GO:GO:0006355GO:GO:0009651GO:GO:0009718GO:GO:0009723
GO:GO:0009737GO:GO:0009739GO:GO:0009751GO:GO:0009753GO:GO:0010023GO:GO:0046686Gramene:AT1G71030.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF507HOGENOM:HOG000237600IntAct:Q9C9A5InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT1G71030KO:K09422OMA:DNEVRIHPfam:PF00249Pfscan:PS51294PhylomeDB:Q9C9A5PIR:F96734
PRO:PR:Q9C9A5PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_177259.1SMART:SM00717SMR:Q9C9A5STRING:3702.AT1G71030.1
SUPFAM:SSF46689TAIR:AT1G71030tair10-symbols:ATMYBL2tair10-symbols:MYBL2UniGene:At.20981UniProt:Q9C9A5
Coordinates (TAIR10) chr1:-:26795383..26796226
Molecular Weight (calculated) 22099.40 Da
IEP (calculated) 10.41
GRAVY (calculated) -0.70
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKTRLRALS PPSGMQHRKR CRLRGRNYVR PEVKQRNFSK DEDDLILKLH ALLGNRWSLI AGRLPGRTDN EVRIHWETYL KRKLVKMGID PTNHRLHHHT
101: NYISRRHLHS SHKEHETKII SDQSSSVSES CGVTILPIPS TNCSEDSTST GRSHLPDLNI GLIPAVTSLP ALCLQDSSES STNGSTGQET LLLFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)