AT1G71010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.915 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FORMS APLOID AND BINUCLEATE CELLS 1C | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein that is predicted to act as a phosphatidylinositol-3P 5-kinase, but, because it lacks a FYVE domain, it is unlikely to be efficiently targeted to membranes containing the proposed phosphatidylinositol-3P substrate. Therefore, its molecular function remains unknown. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FORMS APLOID AND BINUCLEATE CELLS 1C (FAB1C); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT3G14270.1); Has 4961 Blast hits to 4644 proteins in 430 species: Archae - 584; Bacteria - 4; Metazoa - 1658; Fungi - 1043; Plants - 685; Viruses - 0; Other Eukaryotes - 987 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:26782839..26788712 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 185504.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1648 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGIPDGSLLD LIDKVRSWIT SDSSDSLFLL SSSKQDFGIM PIVSKMCHDC GTKVEQGYCC LSCGSCWCKS CSDTEESKMK LCRECDAEVR ELRVKSYDKV 0101: HPRDSPDPPS SLATESESLA SSLEIRDCRN MASIRCYPSR GEEEEARYCG KQLLSPSSDN YQDSSDIESG SVSARHELFS CKSSAGSSPH DSPLRNNFSP 0201: LGRFVQHAKD LRSPTVCSFD NHQEQLLADN LVKPGQGVLE QEDHEEEEDK LQQPLDFENN GRIWYPPPPE DENDDAESNY FHYDDEDDDI GDSATEFSLS 0301: SSFSSHIPTK EKLGENSNEP LRTVVHDHFR ALVAELLRGE ELSPSDDGSA GEWLDIVTAL AWQAANFVKP DTRAGGSMDP GNYVKIKCVA SGNQNESILI 0401: RGIVCSKNIT HKRMISQYKN PRVMLLAGSL EYQRVAGQLA SFNTLLQQEN EHMKAIIAKI ESLRPNVLLV EKSASSYAQQ YLLEKEISLV LNVKRSLLDR 0501: IARCTGAVLC PSLDSISTAR LGHCELFRTE RVLEQHEAGN QSNRKPSRTL MYFEGCPRRL GCTVVLRGSC REELKKVKHV IQYAVFAAYH LSLETSFLAD 0601: EGASLPKIRL KQPGMVRTAS QRRIIDEGIS LITQSPTETD SQALLETAAH EDEHTAPMPE HEVCESLCED FDPTQIFPPS SEVETEQSDT LNGDFANNLV 0701: TRSYSSNQLN DLHEPTLCLS SEIPETPTQQ PSGEEDNGRG EEENQLVNPQ DLPQHESFYE DDVSSEYFSA ADSHQSILVS FSSRCVLKES VCERSRLLRI 0801: KFYGSFDKPL GRYLKDDLFD KTSSCRSCKE LVDAHVLCYS HQNGNLTINV RRLPSMKLPG EQDGKIWMWH RCLRCAHVDG VPPATRRVVM SDAAWGLSFG 0901: KFLELSFSNH ATANRVASCG HSLQRDCLRF YGFGNMVAFF RYSPINILTV LLPPSMLEFN SHPQQEWIRT EAAELVGKMR TMYTEISDML NRMEEKSSLL 1001: EPEQSEACDL HSRIIGLIDQ LVKEKDEYDD ALQPIFEENL QIQGSLDILE LNRLRRALMI GAHAWDHQLY LLNSQLKKAS VFKTGDDNAP RNPEMHDPPK 1101: IDRRMQEGSD ERDEQSHTDS EANGDNKDPE NIPSPGTSLS ERIDSAWLGS FQNLEKAETI AETEGFSAVN SSLRRLARPI RVQSFDSAIR FQERIQKGLP 1201: PSSLYLSTLR SFHASGEYRN MVRDPVSNVM RTYSQMLPLE VQKLDLIVGS APTYISSASQ MADGARMLIP QRGLNDIVVP VYDDDPASVV SYAINSKEYK 1301: EWIVNKGLAS SSSSSNLNNR ESEPSAFSTW RSLSMDVDYI QHAVYGSSQD DRKSPHLTIS FSDRASSSST ATEGKVKFSV TCYFATQFDT LRKTCCPSEV 1401: DFVRSLSRCQ RWSAQGGKSN VYFAKSLDER FIIKQVVKTE LDSFEDFAPE YFKYLKESLS SGSPTCLAKI LGIYQVSIKH PKGGKETKMD LMVMENLFYN 1501: RRISRIYDLK GSARSRYNPN TSGADKVLLD MNLLETLRTE PIFLGSKAKR SLERAIWNDT NFLASVDVMD YSLLVGFDEE RKELVLGIID FMRQYTWDKH 1601: LETWVKASGI LGGPKNASPT IVSPKQYKRR FRKAMTTYFL TVPEPWTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)