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AT1G70940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Auxin efflux carrier family protein
Curator
Summary (TAIR10)
A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane.
Computational
Description (TAIR10)
PIN-FORMED 3 (PIN3); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: in 8 processes; LOCATED IN: lateral plasma membrane, plasma membrane, vesicle membrane, cell surface; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G23080.1); Has 1983 Blast hits to 1757 proteins in 550 species: Archae - 37; Bacteria - 1198; Metazoa - 14; Fungi - 0; Plants - 487; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).
Protein Annotations
BioGrid:28652eggNOG:ENOG410IJ59eggNOG:ENOG410Y9XEEMBL:AC008148EMBL:AF087818EMBL:AK226890EMBL:AY136327
EMBL:BT002085EMBL:CP002684EnsemblPlants:AT1G70940EnsemblPlants:AT1G70940.1entrez:843432ExpressionAtlas:Q9S7Z8GeneID:843432
Genevisible:Q9S7Z8GO:GO:0005783GO:GO:0005886GO:GO:0009416GO:GO:0009606GO:GO:0009630GO:GO:0009734
GO:GO:0009926GO:GO:0009958GO:GO:0009986GO:GO:0010252GO:GO:0010315GO:GO:0010329GO:GO:0012506
GO:GO:0016021GO:GO:0016328GO:GO:0048364GO:GO:0048766GO:GO:0048767GO:GO:0055085Gramene:AT1G70940.1
hmmpanther:PTHR31752hmmpanther:PTHR31752:SF14HOGENOM:HOG000238224InParanoid:Q9S7Z8InterPro:IPR004776InterPro:IPR014024iPTMnet:Q9S7Z8
KEGG:ath:AT1G70940KO:K13947OMA:ENCAPGGPaxDb:Q9S7Z8Pfam:PF03547Pfam:Q9S7Z8PhylomeDB:Q9S7Z8
PIR:G96733PRIDE:Q9S7Z8PRO:PR:Q9S7Z8ProteinModelPortal:Q9S7Z8Proteomes:UP000006548RefSeq:NP_177250.1STRING:3702.AT1G70940.1
TAIR:AT1G70940tair10-symbols:ATPIN3tair10-symbols:PIN3TCDB:2.A.69.1.4TIGRfam:TIGR00946TIGRFAMs:TIGR00946TMHMM:TMhelix
UniGene:At.11573UniProt:Q0WV81UniProt:Q9S7Z8
Coordinates (TAIR10) chr1:+:26743170..26745871
Molecular Weight (calculated) 69470.10 Da
IEP (calculated) 8.42
GRAVY (calculated) 0.14
Length 640 amino acids
Sequence (TAIR10)
(BLAST)
001: MISWHDLYTV LTAVIPLYVA MILAYGSVRW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS TNNPYAMNLR FIAADTLQKI IMLSLLVLWA NFTRSGSLEW
101: SITIFSLSTL PNTLVMGIPL LIAMYGEYSG SLMVQIVVLQ CIIWYTLLLF LFEFRGAKML IMEQFPETAA SIVSFKVESD VVSLDGHDFL ETDAEIGDDG
201: KLHVTVRKSN ASRRSFCGPN MTPRPSNLTG AEIYSLSTTP RGSNFNHSDF YNMMGFPGGR LSNFGPADMY SVQSSRGPTP RPSNFEENCA MASSPRFGYY
301: PGGGAGSYPA PNPEFSSTTT STANKSVNKN PKDVNTNQQT TLPTGGKSNS HDAKELHMFV WSSNGSPVSD RAGLNVFGGA PDNDQGGRSD QGAKEIRMLV
401: PDQSHNGETK AVAHPASGDF GGEQQFSFAG KEEEAERPKD AENGLNKLAP NSTAALQSKT GLGGAEASQR KNMPPASVMT RLILIMVWRK LIRNPNTYSS
501: LIGLIWALVA FRWHVAMPKI IQQSISILSD AGLGMAMFSL GLFMALQPKL IACGNSVATF AMAVRFLTGP AVMAVAAIAI GLRGDLLRVA IVQAALPQGI
601: VPFVFAKEYN VHPAILSTGV IFGMLIALPI TLVYYILLGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)