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AT1G70700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TIFY domain/Divergent CCT motif family protein
Curator
Summary (TAIR10)
JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.
Computational
Description (TAIR10)
TIFY7; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 4 (TAIR:AT1G48500.1); Has 360 Blast hits to 360 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 360; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:28627DIP:DIP-52213NeggNOG:ENOG410JWABeggNOG:ENOG411054BEMBL:AC011663EMBL:AK230165EMBL:AY062515
EMBL:AY081676EMBL:CP002684EnsemblPlants:AT1G70700EnsemblPlants:AT1G70700.1entrez:843407GeneID:843407Genevisible:Q8W4J8
GO:GO:0003714GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0006952GO:GO:0009611GO:GO:0009753
GO:GO:0031347GO:GO:1903507GO:GO:2000022hmmpanther:PTHR33077hmmpanther:PTHR33077:SF7HOGENOM:HOG000015145InParanoid:Q8W4J8
IntAct:Q8W4J8InterPro:IPR010399InterPro:IPR018467KEGG:ath:AT1G70700KO:K13464OMA:NAMSMIEPaxDb:Q8W4J8
PDB:4RS9PDB:4YWCPDBsum:4RS9PDBsum:4YWCPfam:PF06200Pfam:PF09425Pfam:Q8W4J8
Pfscan:PS51320PIR:D96731PRIDE:Q8W4J8PRO:PR:Q8W4J8PROSITE:PS51320Proteomes:UP000006548RefSeq:NP_001031264.4
RefSeq:NP_177227.5SMART:SM00979STRING:3702.AT1G70700.1TAIR:AT1G70700tair10-symbols:JAZ9tair10-symbols:TIFY7UniGene:At.23705
UniGene:At.69290UniProt:Q8W4J8
Coordinates (TAIR10) chr1:+:26654951..26656804
Molecular Weight (calculated) 28843.10 Da
IEP (calculated) 9.59
GRAVY (calculated) -0.42
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MERDFLGLSD KQYLSNNVKH EVNDDAVEER GLSTKAAREW GKSKVFATSS FMPSSDFQEA KAFPGAYQWG SVSAANVFRR CQFGGAFQNA TPLLLGGSVP
101: LPTHPSLVPR VASSGSSPQL TIFYGGTISV FNDISPDKAQ AIMLCAGNGL KGETGDSKPV REAERMYGKQ IHNTAATSSS SATHTDNFSR CRDTPVAATN
201: AMSMIESFNA APRNMIPSVP QARKASLARF LEKRKERLMS AMPYKKMLLD LSTGESSGMN YSSTSPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)