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AT1G70620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cyclin-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cyclin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 112611 Blast hits to 60905 proteins in 2332 species: Archae - 119; Bacteria - 12075; Metazoa - 52298; Fungi - 16219; Plants - 10822; Viruses - 1423; Other Eukaryotes - 19655 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKSBeggNOG:ENOG41120V6EMBL:CP002684EnsemblPlants:AT1G70620EnsemblPlants:AT1G70620.1entrez:843399ExpressionAtlas:F4I6U8
GeneID:843399Gramene:AT1G70620.1InterPro:IPR031937iPTMnet:F4I6U8ncoils:CoilPaxDb:F4I6U8Pfam:PF15996
PhylomeDB:F4I6U8PRIDE:F4I6U8ProteinModelPortal:F4I6U8Proteomes:UP000006548RefSeq:NP_177219.2STRING:3702.AT1G70620.3TAIR:AT1G70620
UniGene:At.24262UniProt:F4I6U8
Coordinates (TAIR10) chr1:+:26626634..26630755
Molecular Weight (calculated) 98821.30 Da
IEP (calculated) 7.64
GRAVY (calculated) -1.33
Length 897 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAYQPPPQY LRPPSGPPPP TDPYHQYYQH QARPPVPPPT QPGGPPAWYS NQFHHPHSPS PPPPPPPQWG PPSPHYPQGQ PYSSPAYPPH QPPFNAGANG
101: NSQFPPPSTG APIPPPYPQA NQEWGNPNWG YQQQQGHTPQ ANSNVEDWAV KAKEWAAANK DQQSQQSAPN QPSGQVYQQQ YPTHGYQDFH QQAVPGVSYQ
201: QHQQFPVPPT TQPERYPNYA TGNESFPGVG LPQENLPTSS AIHQQEVPYS YSSVAEESGN TTQHEVHISL PDGGGPVHTE QHMQYAYGDQ SAAPPSNFSD
301: HNAWQPHTTS GVVYPPIPSS AQSIPQHDSS MAIPPVSGHI MPPYGRFPPP NPQPVGPPYA FGTKPPLHPV AAFMDDSYAA SSVPPKKAPV PNWLKEELLK
401: KKADLGRPSS GRFEERESMD DDVLYKPPTK ADQPDKKSFS PSNSSDEEEE DEMDAARTTE INMEIKRILT EVLLKVTDEL FDEIATKVIN EDEAIPKADP
501: LHKASAKILV SVEGANTKAS SGSPADVLGL ASYASDDDDA DTDAASDANA DENGVESLGV GSRHNVSQQP STEKLPDPEA MASAKLDPAV GVNANSGKNS
601: KSGLEDYSQM PGSTRKDDEA GSTKISDVSA SSGLDDDTSG SRKEHPDRTD SDKDAILDEP HVKNSGVKSD CNLRQDSNKP YGKDLSDEVS TDRSRIVETK
701: GGKEKGDSQN DSKDRMKEND LKSAEKVKGV ESNKKSTDPH VKKDSRDVER PHRTNSKEDR GKRKEKEKEE ERSRHRRAEN SSKDKRRRSP TSNESSDDSK
801: RKSRSRRRSV SPSPVRSRRK RSSPSSDESS DDSKRKSSSK RKNRSPSPGK SRRRHVSSRS PHSKHSQHKN TLYSSHDKSR SKRSRSRSRS PHRRHRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)