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AT1G70610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transporter associated with antigen processing protein 1
Curator
Summary (TAIR10)
member of TAP subfamily
Computational
Description (TAIR10)
transporter associated with antigen processing protein 1 (TAP1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 433965 Blast hits to 389325 proteins in 4163 species: Archae - 7467; Bacteria - 334124; Metazoa - 10295; Fungi - 7727; Plants - 5683; Viruses - 22; Other Eukaryotes - 68647 (source: NCBI BLink).
Protein Annotations
BioGrid:28618eggNOG:COG1132eggNOG:KOG0058EMBL:AC010796EMBL:AC011663EMBL:AK228750EMBL:AY078409
EMBL:CP002684EnsemblPlants:AT1G70610EnsemblPlants:AT1G70610.1entrez:843398Gene3D:3.40.50.300GeneID:843398Genevisible:Q8RY46
GO:GO:0005215GO:GO:0005524GO:GO:0009507GO:GO:0009941GO:GO:0016021GO:GO:0031969GO:GO:0042626
Gramene:AT1G70610.1hmmpanther:PTHR24222hmmpanther:PTHR24222:SF22InParanoid:Q8RY46InterPro:IPR003439InterPro:IPR003593InterPro:IPR011527
InterPro:IPR017871InterPro:IPR027417KEGG:ath:AT1G70610OMA:ENWKSYAPaxDb:Q8RY46Pfam:PF00005Pfam:PF00664
Pfam:Q8RY46Pfscan:PS50893Pfscan:PS50929PhylomeDB:Q8RY46PIR:C96730PRIDE:Q8RY46PRO:PR:Q8RY46
PROSITE:PS00211PROSITE:PS50893PROSITE:PS50929ProteinModelPortal:Q8RY46Proteomes:UP000006548Reactome:R-ATH-382556Reactome:R-ATH-983170
RefSeq:NP_177218.3scanprosite:PS00211SMART:SM00382SMR:Q8RY46STRING:3702.AT1G70610.1SUPFAM:SSF52540SUPFAM:SSF90123
TAIR:AT1G70610tair10-symbols:ATTAP1tair10-symbols:TAP1TMHMM:TMhelixUniGene:At.35285UniProt:Q8RY46
Coordinates (TAIR10) chr1:+:26622086..26626331
Molecular Weight (calculated) 78043.40 Da
IEP (calculated) 8.50
GRAVY (calculated) 0.09
Length 700 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQQVLGCTS RPIRVSLHRC SVITTSDTIR RKNLRFVRNP RLSFSLQSST RNYRLPSINC STVNGAVAET AEYYEGEGDN VSLAEKIRQC IDFLRTILPG
101: GSWWSFSDEV DGRFIAKPVT VWRALSRMWE LVAEDRWVIF AAFSTLIVAA LSEITIPHFL TASIFSAQSG DIAVFHRNVK LLVTLCVTSG ICSGIRGCFF
201: GIANMILVKR MRETLYSTLL FQDISFFDSQ TVGDLTSRLG SDCQQVSRVI GNDLNMIFRN VLQGTGALIY LLILSWPLGL CTLVICCILA AVMFVYGMYQ
301: KKTAKLIQEI TASANEVAQE TYSLMRTVRV YGTEKQEFKR YNHWLQRLAD ISLRQSAAYG IWNWSFNTLY HATQIIAVLV GGLSILAGQI TAEQLTKFLL
401: YSEWLIYATW WVGDNLSSLM QSVGASEKVF QMMDLKPSDQ FISKGTRLQR LTGHIEFVDV SFSYPSRDEV AVVQNVNISV HPGEVVAIVG LSGSGKSTLV
501: NLLLQLYEPT SGQILLDGVP LKELDVKWLR QRIGYVGQEP KLFRTDISSN IKYGCDRNIS QEDIISAAKQ AYAHDFITAL PNGYNTIVDD DLLSGGQKQR
601: IAIARAILRD PRILILDEAT SALDAESEHN VKGVLRSIGN DSATKRSVIV IAHRLSTIQA ADRIVAMDSG RVVEMGSHKE LLSKDGLYAR LTKRQNDAVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)