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AT1G70540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo sac development arrest 24 (EDA24); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: polar nucleus fusion; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G23350.1); Has 67 Blast hits to 67 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWU6eggNOG:ENOG41104KZEMBL:AC010796EMBL:CP002684
EnsemblPlants:AT1G70540EnsemblPlants:AT1G70540.1entrez:843391Gene3D:1.20.140.40
GeneID:843391GO:GO:0004857GO:GO:0010197Gramene:AT1G70540.1
hmmpanther:PTHR31707InterPro:IPR006501KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11
KEGG:ath:AT1G70540ncoils:CoilOMA:HEMADNCPfam:PF04043
PhylomeDB:Q9CAL1PIR:D96729Proteomes:UP000006548RefSeq:NP_564990.1
SMART:SM00856STRING:3702.AT1G70540.1SUPFAM:SSF101148TAIR:AT1G70540
tair10-symbols:EDA24TIGRfam:TIGR01614TIGRFAMs:TIGR01614UniGene:At.35291
unipathway:UPA00545UniProt:Q9CAL1
Coordinates (TAIR10) chr1:+:26593973..26594476
Molecular Weight (calculated) 17708.40 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.09
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTNLHLATA VILLLLTASQ SGVAMAQRVM GGGRDPCSVS DFKVLCRSVV KGQKNVNAAT EVSIRELMKR TIKAKEAAKI SRKSGGGLKT CYSNYDSALE
101: NLQKALKNIK QNDGFSLNIN LSASLTDFDT CNDAMGGGTA SNVFAKSTST LHEMADNCLA LSTLVKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)