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AT1G70510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At1g70510
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : KNOTTED-like from Arabidopsis thaliana 2
Curator
Summary (TAIR10)
A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems.
Computational
Description (TAIR10)
KNOTTED-like from Arabidopsis thaliana 2 (KNAT2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to ethylene stimulus, cytokinin mediated signaling pathway, specification of carpel identity; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED1-like homeobox gene 6 (TAIR:AT1G23380.1); Has 6101 Blast hits to 6101 proteins in 374 species: Archae - 0; Bacteria - 0; Metazoa - 1779; Fungi - 271; Plants - 3894; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Protein Annotations
BioGrid:28608eggNOG:ENOG410XPMQeggNOG:KOG0773EMBL:AC010796EMBL:CP002684EMBL:U14175EMBL:X81353
EMBL:X81354EnsemblPlants:AT1G70510EnsemblPlants:AT1G70510.1entrez:843388Gene3D:1.10.10.60GeneID:843388Genevisible:P46640
GO:GO:0003700GO:GO:0005634GO:GO:0009736GO:GO:0010094GO:GO:0043565Gramene:AT1G70510.1hmmpanther:PTHR11850
hmmpanther:PTHR11850:SF99HOGENOM:HOG000272741InParanoid:P46640IntAct:P46640InterPro:IPR001356InterPro:IPR005539InterPro:IPR005540
InterPro:IPR005541InterPro:IPR008422InterPro:IPR009057InterPro:IPR017970iPTMnet:P46640KEGG:ath:AT1G70510OMA:MEIACIL
PaxDb:P46640Pfam:P46640Pfam:PF03789Pfam:PF03790Pfam:PF03791Pfam:PF05920Pfscan:PS50071
Pfscan:PS51213PhylomeDB:P46640PIR:S57818PRO:PR:P46640PROSITE:PS00027PROSITE:PS50071PROSITE:PS51213
ProteinModelPortal:P46640Proteomes:UP000006548RefSeq:NP_177208.2scanprosite:PS00027SMART:SM00389SMART:SM01188SMART:SM01255
SMART:SM01256SMR:P46640STRING:3702.AT1G70510.1SUPFAM:SSF46689TAIR:AT1G70510tair10-symbols:ATK1tair10-symbols:KNAT2
UniGene:At.21162UniProt:P46640
Coordinates (TAIR10) chr1:+:26576635..26582145
Molecular Weight (calculated) 35639.90 Da
IEP (calculated) 4.65
GRAVY (calculated) -0.71
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRMCGFRST EDYSEKATLM MPSDYQSLIC STTGDNQRLF GSDELATALS SELLPRIRKA EDNFSLSVIK SKIASHPLYP RLLQTYIDCQ KVGAPMEIAC
101: ILEEIQRENH VYKRDVAPLS CFGADPELDE FMETYCDILV KYKTDLARPF DEATTFINKI EMQLQNLCTG PASATALSDD GAVSSDEELR EDDDIAADDS
201: QQRSNDRDLK DQLLRKFGSH ISSLKLEFSK KKKKGKLPRE ARQALLDWWN VHNKWPYPTE GDKISLAEET GLDQKQINNW FINQRKRHWK PSENMPFDMM
301: DDSNETFFTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)