AT1G70420.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1645) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT1G23710.1); Has 179 Blast hits to 179 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:26539840..26540658 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31023.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.91 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.08 | ||||||||||||||||||||||||||||
| Length | 272 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQVISPSSPA PRFAGKERFS EVYGELNDDF GSKLKISSKE EENRDDDSWW NQNGTDKDDE GREEDFSFAS VNADNSPITA DEAFEDGQIR PVYPLFNRNI 101: FFDDPEEKTL RSPLKKLFVE STTTEEEEEE SDTVGPYCSW TNRTVEQASP ETCRKSNSTG FSKLWRFRDL VLRSNSDGKD AFVFLSNGSS STSSTSSTAA 201: RLSGVVKSSE KGKEKTKTDK KKDKMRTKSA HEKLYMRNRA MREEGKRRSY LPYKHVGFFT NVNGLTRNVH PY |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)