AT1G70340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF936) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF936); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF936, plant (InterPro:IPR010341); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF936) (TAIR:AT1G23790.1); Has 227 Blast hits to 191 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 219; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:26504567..26506389 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56395.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.37 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||
| Length | 510 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAALAPGILQ KLIQGMKTGI KPTREHRSSM LQVTDIVPID LDEKSLEPKQ GFLIKISDSS HSIYVSLPSD QDDVVLSNKL QLGQFIYVDR LEPGSPVPVI 101: KGAKPIPGRH PLLGTPETLV VPKERTDQEI GSKPRRGSWG QNVDFSSSPF VVKPMALEFD HSTPAKRSVS ARFAASPIRR GGVRCSFGGG VLGKLEGESP 201: ATAMLRKSCF VSSASKFPRS RSVCDRQAKK NNASLFSPFK SSLEAQEDVV PLSTSKKIKP EKDTNLSGRL NILSKEATQL REVAQKVALQ ALREATITEI 301: VVRHTKTFTN LSKSAKADCP AVCFEKFMEF HQQMAQTIGE LTSIEVAATP DAENKSQNIN ARTENQKPTE EGSSSILHEI AYNSIDQEKR RSKRRIVLKQ 401: QSEGKTVRSN DENKNPASGG ISNTIRLAKE IEDEAANWFM EFIEIALEKG MKKSRGPDDA DVKKVPQSLI LGVLNWIEVE QSDSNNNKRR RVHPKASKIT 501: RKLRIKLKNP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)