AT1G70200.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 4744 Blast hits to 3664 proteins in 382 species: Archae - 19; Bacteria - 294; Metazoa - 1723; Fungi - 497; Plants - 212; Viruses - 61; Other Eukaryotes - 1938 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:26432514..26434351 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60341.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.78 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||
| Length | 538 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNGASLCNSV LLHSHSLSRF QSSSSSCSVY LISSARTTSK YISISHRIRQ SFREVIEKRS NGFCSFAVNK RRSGDSVIVE SDDDDEEDDE DWGEFDGEDE 101: GEEEEEDEGE FLPMDKMKKW LEKKPRGFGL GKKYETLIED KLLDEIEQSW KAQAANLNKL KNDPLKSQQL KRDDNLLKGT GETQIGFRVR VTNLPKKKNV 201: HRDLKVAFKE VSGVLSITPA VSGNKKTKDP VCKGFAHVDF KTEIDANRFV KQFTGQSLAF GKVIKQIKCQ VVEFTSDDSV SKEVYLDNGF KVQKLPYSGL 301: EGDSSADVVE EEVLLGSGEE SDDSEEEVDE REVEDDERNH ISSSIESSPI EMTRDSNTKL KFEKQVVKRE IREHEELETP LVSFQVNKSE EAAAETHLDD 401: EQSEEAVAET LLNDELDGDD EEEVAEDNLE PLNSSLSSSE ENRVDRIRRL EQKLLGKEKL LGGGVGFDKP EAKPARVEGK KKEKKKKTKI LVKGQAKKGT 501: KIEIPGSSKR LKVKEKALLT GVLVKYAAKV ASTSNNDE |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)