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AT1G70200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 4744 Blast hits to 3664 proteins in 382 species: Archae - 19; Bacteria - 294; Metazoa - 1723; Fungi - 497; Plants - 212; Viruses - 61; Other Eukaryotes - 1938 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX5PeggNOG:ENOG4111W8HEMBL:BT003858EMBL:BT005155EMBL:CP002684EnsemblPlants:AT1G70200EnsemblPlants:AT1G70200.1
entrez:843356Gene3D:3.30.70.330GeneID:843356GO:GO:0000166GO:GO:0003676GO:GO:0009507Gramene:AT1G70200.1
hmmpanther:PTHR37200hmmpanther:PTHR37200:SF1HOGENOM:HOG000147060InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT1G70200ncoils:Coil
OMA:KQIKCEMPfscan:PS50102PROSITE:PS50102Proteomes:UP000006548RefSeq:NP_177177.2SMR:Q84JK1STRING:3702.AT1G70200.1
SUPFAM:SSF54928TAIR:AT1G70200UniGene:At.35335UniProt:Q84JK1
Coordinates (TAIR10) chr1:-:26432514..26434351
Molecular Weight (calculated) 60341.40 Da
IEP (calculated) 4.78
GRAVY (calculated) -0.84
Length 538 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGASLCNSV LLHSHSLSRF QSSSSSCSVY LISSARTTSK YISISHRIRQ SFREVIEKRS NGFCSFAVNK RRSGDSVIVE SDDDDEEDDE DWGEFDGEDE
101: GEEEEEDEGE FLPMDKMKKW LEKKPRGFGL GKKYETLIED KLLDEIEQSW KAQAANLNKL KNDPLKSQQL KRDDNLLKGT GETQIGFRVR VTNLPKKKNV
201: HRDLKVAFKE VSGVLSITPA VSGNKKTKDP VCKGFAHVDF KTEIDANRFV KQFTGQSLAF GKVIKQIKCQ VVEFTSDDSV SKEVYLDNGF KVQKLPYSGL
301: EGDSSADVVE EEVLLGSGEE SDDSEEEVDE REVEDDERNH ISSSIESSPI EMTRDSNTKL KFEKQVVKRE IREHEELETP LVSFQVNKSE EAAAETHLDD
401: EQSEEAVAET LLNDELDGDD EEEVAEDNLE PLNSSLSSSE ENRVDRIRRL EQKLLGKEKL LGGGVGFDKP EAKPARVEGK KKEKKKKTKI LVKGQAKKGT
501: KIEIPGSSKR LKVKEKALLT GVLVKYAAKV ASTSNNDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)