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AT1G70190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: Ribosomal protein L12 family protein (TAIR:AT4G36420.1); Has 8429 Blast hits to 8429 proteins in 2754 species: Archae - 0; Bacteria - 5654; Metazoa - 195; Fungi - 132; Plants - 253; Viruses - 0; Other Eukaryotes - 2195 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0222eggNOG:KOG1715EMBL:AC002062EMBL:AF360123EMBL:AY051024EMBL:CP002684EnsemblPlants:AT1G70190
EnsemblPlants:AT1G70190.1EnsemblPlants:AT1G70190.2entrez:843355Gene3D:3.30.1390.10GeneID:843355GO:GO:0003735GO:GO:0005739
GO:GO:0005840GO:GO:0006412Gramene:AT1G70190.1Gramene:AT1G70190.2HAMAP:MF_00368hmmpanther:PTHR24089hmmpanther:PTHR24089:SF387
HOGENOM:HOG000248814InterPro:IPR000206InterPro:IPR008932InterPro:IPR013823InterPro:IPR014719KEGG:ath:AT1G70190KO:K02935
OMA:TVAVMKPPfam:PF00542Pfam:PF16320PhylomeDB:O04527PIR:G96724ProDom:PD001326Proteomes:UP000006548
RefSeq:NP_001185360.1RefSeq:NP_564986.1SMR:O04527STRING:3702.AT1G70190.1SUPFAM:SSF48300SUPFAM:SSF54736TAIR:AT1G70190
UniGene:At.10300UniProt:O04527
Coordinates (TAIR10) chr1:+:26430616..26431242
Molecular Weight (calculated) 22723.50 Da
IEP (calculated) 5.94
GRAVY (calculated) -0.29
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLVLRFRQH LSQTSSRLSL LSRIGGYRSY TQPAKIEDEE EEEFDQRKLP TDYDPATFDP TEHRSPPTDR VFRLVDEISS LTLLEISELG SIIMKKKGMT
101: ELPTVAVMKP GAGGGVGVGG GGGMVSQSGV SEEAKVEKTV FEIKLESFEA SAKIKIIKEL RSFTDLGLKE AKALVEKTPA ILKAGLSKEE GEKILEKLKA
201: LGAKVVLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)