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AT1G70170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
no data
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : matrix metalloproteinase
Curator
Summary (TAIR10)
mutant has Late flowering; Early senescence; Matrix Metalloproteinase
Computational
Description (TAIR10)
matrix metalloproteinase (MMP); FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT1G24140.1); Has 2679 Blast hits to 2485 proteins in 220 species: Archae - 2; Bacteria - 128; Metazoa - 2206; Fungi - 4; Plants - 185; Viruses - 44; Other Eukaryotes - 110 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G70170-MONOMEREC:3.4.24.-eggNOG:ENOG410XQ5DeggNOG:KOG1565EMBL:AC002062EMBL:AK226646EMBL:CP002684
EnsemblPlants:AT1G70170EnsemblPlants:AT1G70170.1entrez:843353Gene3D:3.40.390.10GeneID:843353Genevisible:O04529GO:GO:0004222
GO:GO:0005886GO:GO:0007275GO:GO:0008270GO:GO:0009651GO:GO:0009753GO:GO:0031012GO:GO:0031225
GO:GO:0046686GO:GO:0080186GO:GO:1900056GO:GO:2000028Gramene:AT1G70170.1hmmpanther:PTHR10201hmmpanther:PTHR10201:SF140
HOGENOM:HOG000239471InParanoid:O04529InterPro:IPR001818InterPro:IPR002477InterPro:IPR006026InterPro:IPR021158InterPro:IPR021190
InterPro:IPR024079KEGG:ath:AT1G70170MEROPS:M10.A01OMA:TISSRTKPaxDb:O04529Pfam:PF00413Pfam:PF01471
PhylomeDB:O04529PIR:E96724PRINTS:PR00138PRO:PR:O04529PROSITE:PS00546ProteinModelPortal:O04529Proteomes:UP000006548
Reactome:R-ATH-1592389RefSeq:NP_177174.1scanprosite:PS00546SMART:SM00235SMR:O04529STRING:3702.AT1G70170.1SUPFAM:SSF47090
SUPFAM:SSF55486TAIR:AT1G70170tair10-symbols:MMPTMHMM:TMhelixUniGene:At.27821UniProt:O04529
Coordinates (TAIR10) chr1:+:26424005..26425141
Molecular Weight (calculated) 42008.30 Da
IEP (calculated) 6.18
GRAVY (calculated) -0.17
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFCVFGFLS LFLIVSPASA WFFPNSTAVP PSLRNTTRVF WDAFSNFTGC HHGQNVDGLY RIKKYFQRFG YIPETFSGNF TDDFDDILKA AVELYQTNFN
101: LNVTGELDAL TIQHIVIPRC GNPDVVNGTS LMHGGRRKTF EVNFSRTHLH AVKRYTLFPG EPRWPRNRRD LTYAFDPKNP LTEEVKSVFS RAFGRWSDVT
201: ALNFTLSESF STSDITIGFY TGDHGDGEPF DGVLGTLAHA FSPPSGKFHL DADENWVVSG DLDSFLSVTA AVDLESVAVH EIGHLLGLGH SSVEESIMYP
301: TITTGKRKVD LTNDDVEGIQ YLYGANPNFN GTTSPPSTTK HQRDTGGFSA AWRIDGSSRS TIVSLLLSTV GLVLWFLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)