AT1G70160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.840 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27020.1); Has 108 Blast hits to 108 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:26420159..26422345 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 59138.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.73 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||
| Length | 523 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSQNPSLFFL LCLGLGFCVD LGQSLKVPFS VNDVLPMLPR QVSWPVLNSF HNAVDLLPVF IGSVTPNNVS IEWKGACFNG NEARLDITGS DRDVPGLGGG 101: VLHLKTSKAH SLTCMDLYVF ATPYRITWDY YFSARDHTLN FDSWEEKAEL EYVKEHGVSV FLMPSGMLGT LLSLIDVLPL FSNTAWGQNA NLAFLTKHMG 201: ATFEKRSQPW RSMINPEDVH SGDFLAVSKI RGRWGGFETL EKWVTGAFAG HTAVCLKDDL GNLWVGESGH ENEKGEEIIV VIPWDEWWEL TLKDNSNPQV 301: ALLPLHPDIR AKFNNTAAWE YARSMLGKPY GYHNMIFSWI DTLGDNYPPP LDAHLVISVM SMWTRVQPAY AANMWNEALN KRLGTEDLDL YGILEETARR 401: GMSFDELLTI PEQDEWVYSD GKSTTCVAFI LAMYKAAGIF DPLADHIQVT EFTIRDAYTL KLFESNQTRL PSWCNTEEGK LDFCQILGEY RMELPGYNTI 501: YPYPNMNQNC PSLPPNYERP SKC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)